Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0527
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14145.1 68417.m02182 expressed protein                             32   0.32 
At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong...    27   9.2  
At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   9.2  
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa...    27   9.2  
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa...    27   9.2  

>At4g14145.1 68417.m02182 expressed protein
          Length = 134

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 553 VTFVFTGGRTSWESARVGTTTPPISAVKQ*CVSFRRWGSR 672
           +T + TG +T  +S+  G+ T P   +KQ   SF+RWG R
Sbjct: 1   MTTIETGQKTQ-KSSPSGSGTTPTGTLKQSSASFKRWGRR 39


>At4g33070.1 68417.m04711 pyruvate decarboxylase, putative strong
           similarity to SP|P51846 Pyruvate decarboxylase isozyme 2
           (EC 4.1.1.1) (PDC) {Nicotiana tabacum}; contains
           InterPro entry IPR000399: Pyruvate decarboxylase
          Length = 607

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 425 ATQQFLSSGAKTLYIVSPALRITTVCGLFV 514
           AT +FL+   K + +  P LR+   C  FV
Sbjct: 245 ATLEFLNKAVKPVMVGGPKLRVAKACDAFV 274


>At3g21420.1 68416.m02703 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to SP|Q9ZWQ9 Flavonol synthase
           (EC 1.14.11.-) {Citrus unshiu}; contains Pfam profile
           PF03171: oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 364

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +3

Query: 96  FGRIFIYPEPQRLTXXXXXXXXXTHKRVKKLVHPKNVCLMWESKPWRYSQYLYCTTESVK 275
           +G+ FI+ E Q+L             +++   +PK    +W SKP R+S+ L   ++ ++
Sbjct: 131 YGQAFIFSEDQKLDWCNMFALGVHPPQIR---NPK----LWPSKPARFSESLEGYSKEIR 183

Query: 276 SVLKSVL 296
            + K +L
Sbjct: 184 ELCKRLL 190


>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 137

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 488 ITTVCG-LFVLPCLYKFL 538
           I T+CG LF  PCLYK+L
Sbjct: 30  IVTLCGHLFCWPCLYKWL 47


>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 226

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 488 ITTVCG-LFVLPCLYKFL 538
           I T+CG LF  PCLYK+L
Sbjct: 34  IVTLCGHLFCWPCLYKWL 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,761,872
Number of Sequences: 28952
Number of extensions: 260046
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)