Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0525
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    29   0.13 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   0.69 
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   0.91 
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   2.8  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    24   6.4  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    23   8.5  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -2

Query: 212 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 99
           DGFV++LPYD V     +  L R+G+ +     W  A  F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 193 SHMTRFTNDSNELVYSLWMFMIGQ 122
           SH  +F ND  E  Y  W F+  Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 0.91
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 75  GMNNEYRISLAKKGGGCPIMNIHS 146
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 117 GGCPIMNIHSEYTNSFESFVNRVIWENFYK 206
           GG P+  + SE  + F    ++ I+E +YK
Sbjct: 399 GGKPLKEVFSEILDLFRYIASKDIFEAYYK 428


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 302 RVWCKLLYFENERNLN*DFL 243
           R W +L  FEN RNL   FL
Sbjct: 515 REWRQLFKFENYRNLKNKFL 534


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 24  EDYVPHEVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFES 170
           E ++    ++I   S +   +  R+ +A  GGG P M   +   N+F++
Sbjct: 101 ESFISKTGLKIDTKSVLNDTDGPRLGIAISGGGFPAMLTGAGAINAFDA 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,675
Number of Sequences: 5004
Number of extensions: 24689
Number of successful extensions: 64
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)