Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0525
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0019 + 11931519-11932310                                         28   1.4  
01_07_0242 + 42234217-42234320,42234708-42235029,42235377-422357...    28   1.8  
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396...    26   5.6  
04_04_0822 + 28352941-28353825,28353863-28354016,28354714-283547...    26   7.4  
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557...    25   9.7  
09_02_0304 + 7118372-7118959                                           25   9.7  

>10_07_0019 + 11931519-11932310
          Length = 263

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 222 RCKRWVCRSSPI*RG 178
           RC+RW CRS P  RG
Sbjct: 39  RCRRWWCRSEPTSRG 53


>01_07_0242 +
           42234217-42234320,42234708-42235029,42235377-42235778,
           42235921-42236265,42236785-42236854,42237098-42237173,
           42237309-42237459
          Length = 489

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 39  HEVIRIV-EPSYVGMNNEYRISLAKKGGGCPIMNIHSE 149
           HE ++++ +P   G   EY   +A+  GG PI  I ++
Sbjct: 213 HETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGND 250


>12_01_0500 +
           3966456-3968556,3968640-3969087,3969524-3969718,
           3969891-3970119
          Length = 990

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +3

Query: 39  HEVIRIVEPSYVGMNNEYRIS---LAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKP 209
           H V      SY G  N  ++S   L   GGG   +N  + Y +  E  V  V W    + 
Sbjct: 527 HNVPHTKLASYKGHQNWVKVSGEHLTFPGGGTQFINGAAHYIDLIEEAVPAVAWGRRSRV 586

Query: 210 IVYIG 224
           ++ +G
Sbjct: 587 VLDVG 591


>04_04_0822 +
           28352941-28353825,28353863-28354016,28354714-28354754,
           28355060-28355310,28355411-28355591,28356138-28356323,
           28356396-28356569,28356992-28357150,28357424-28357501,
           28357612-28357748,28357980-28358044,28358115-28358148,
           28358216-28358372,28359135-28359196,28360041-28360118,
           28360940-28361042
          Length = 914

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 127 GQPPPFLARLILYSLF 80
           G PPPF   L+ YSLF
Sbjct: 425 GYPPPFNVLLVCYSLF 440


>11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,
            5575911-5576013,5576122-5576187,5576378-5576461,
            5577448-5577522,5577615-5577668,5577752-5577895,
            5578632-5578685,5578877-5578981,5579076-5579173,
            5579660-5579729,5580444-5580566,5580647-5580727,
            5580996-5581476,5581684-5581816,5582550-5582598,
            5582704-5582892,5583642-5583703,5583762-5585316
          Length = 1256

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 158  VGVLAVDVHDWAAAALFSQTNSVFVVHAHVGWLHNSDYFVGHVVFFPPKSV 6
            +G     + D  AA L+ Q   V    +  GW H S   + +V  F P  V
Sbjct: 1174 LGAHFTGIRDPRAALLYRQLIDVAWTGSRRGWSHTSRKVIAYVWEFSPSFV 1224


>09_02_0304 + 7118372-7118959
          Length = 195

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
 Frame = +2

Query: 41  RSNQNCGAILRGHEQRIQN*SG*KGRR----LPNHE 136
           R    C  +  GHE  +   SG  GRR    LP HE
Sbjct: 125 RRGGGCNMVFDGHEMFVDGRSGGGGRRLLGDLPQHE 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,077,773
Number of Sequences: 37544
Number of extensions: 173582
Number of successful extensions: 395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)