Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0525
         (318 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   29   1.1  
SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 27   4.4  
SB_32688| Best HMM Match : PAZ (HMM E-Value=7.7)                       26   7.6  

>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 535

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 42  EVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYI 221
           E I +    ++  NN   +   +  GG    +  +E   S E+  N V WEN    + YI
Sbjct: 101 ETINVTGNYWLPSNNVLELKYLRDIGGVTWTDNCAECCLSKETSQNSVTWENLRSEMYYI 160

Query: 222 GTD 230
           G +
Sbjct: 161 GIE 163


>SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 233 RVCADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAA 117
           R   D + GF+E L Y    KRLE  G L    H+W ++
Sbjct: 326 RSLTDHSKGFIEKLLYKIPSKRLEVAGAL---THEWLSS 361


>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 683

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 213 RWVCRSSPI*RGSQTTRTSWCTRCGCS*LG 124
           R  CRS+P   G +     W + C CS  G
Sbjct: 207 RNACRSNPCQNGGRCINKIWSSACDCSGTG 236


>SB_32688| Best HMM Match : PAZ (HMM E-Value=7.7)
          Length = 665

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 122 LPNHEHPQRVHQLVRVVCEPRH 187
           +P H   QR H +V +V  PRH
Sbjct: 497 IPRHTMKQRNHSIVLLVTVPRH 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,223,298
Number of Sequences: 59808
Number of extensions: 193576
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)