Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0524
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    31   0.83 
01_01_0813 - 6327086-6327262,6327342-6327440,6327516-6327608,632...    28   7.7  

>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = +1

Query: 442 HNRTSSQYLTRL*SLEASKTVCKFLFKYKILILTIRNISSLAVMSLGFRGHLTLDVLCAS 621
           ++   SQY+  +  LE S  + KFL   +I  LT   +  L    L  + H TL + C +
Sbjct: 381 YDEAMSQYIHTIGHLEPSYVIQKFLDAKRIYNLT-NYLEKLHDRGLASKDHTTLLLNCYT 439

Query: 622 RIKKIQR 642
           ++K +++
Sbjct: 440 KLKDVEK 446


>01_01_0813 -
           6327086-6327262,6327342-6327440,6327516-6327608,
           6327695-6327898,6327988-6328109,6329606-6329738,
           6330232-6330270,6332308-6332412
          Length = 323

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 625 YEKHTERLALSDHGSLRTSPRAN*CFLWSK 536
           Y   T++L   D G  RTSP A  C +W++
Sbjct: 42  YGHRTDKLHREDDGLSRTSPTAAACAVWAQ 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,906,068
Number of Sequences: 37544
Number of extensions: 235910
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)