Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0524
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.0  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 97  PLNITCDVSSSYTH 138
           P N TC +S+SYT+
Sbjct: 167 PENNTCSISNSYTN 180


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = -3

Query: 63   AATYLE----ILVLRSHFLQYNGCP 1
            AAT+L      LVLR H    NGCP
Sbjct: 1504 AATFLSPNSTTLVLRLHVWPDNGCP 1528


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = -3

Query: 63   AATYLE----ILVLRSHFLQYNGCP 1
            AAT+L      LVLR H    NGCP
Sbjct: 1500 AATFLSPNSTTLVLRLHVWPDNGCP 1524


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
          protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 27 HFLQYNGC 4
          HFLQY GC
Sbjct: 36 HFLQYPGC 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,310
Number of Sequences: 438
Number of extensions: 3050
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)