Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0523
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    29   0.76 
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   2.3  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   2.3  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   2.3  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   2.3  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    27   3.1  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   4.1  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    26   4.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   4.1  
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    26   5.4  
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ...    25   7.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   7.1  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   7.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   9.4  

>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 172 PVTYPTNPPAILYTALLGFPITRPNRDTCVT 80
           P  YP  PP + +T  +  P   PN + C++
Sbjct: 62  PQDYPLMPPKMKFTTEIWHPNVHPNGEVCIS 92


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 306 FNYFEICVFVNTLTFFFSVSHKRKRLI 226
           F +  +C+F NT+ FFF  +  R  LI
Sbjct: 48  FGFALVCLFTNTIVFFFKHTIYRGTLI 74


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 306 FNYFEICVFVNTLTFFFSVSHKRKRLI 226
           F +  +C+F NT+ FFF  +  R  LI
Sbjct: 48  FGFALVCLFTNTIVFFFKHTIYRGTLI 74


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 306 FNYFEICVFVNTLTFFFSVSHKRKRLI 226
           F +  +C+F NT+ FFF  +  R  LI
Sbjct: 48  FGFALVCLFTNTIVFFFKHTIYRGTLI 74


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 306 FNYFEICVFVNTLTFFFSVSHKRKRLI 226
           F +  +C+F NT+ FFF  +  R  LI
Sbjct: 48  FGFALVCLFTNTIVFFFKHTIYRGTLI 74


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 178 HAPVTYPTNPPAILYTALLGFPITRPNRDTCV 83
           H P  YP  PP + +T  +  P    N   C+
Sbjct: 55  HFPTDYPFKPPKVNFTTRIYHPNINSNGSICL 86


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 465 YDSCISGGWP*AVSV*VALIEMF 397
           +DS I GGWP AV +  A+I +F
Sbjct: 142 FDSIIGGGWP-AVLISTAMIVIF 163


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 172 PVTYPTNPPAILYTALLGFPITRPNRDTCVT 80
           P  YPT PP   +T  L  P   P+   C++
Sbjct: 65  PEEYPTRPPKCRFTPPLFHPNVYPSGTVCLS 95


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 359 NNLQGNEKKKQTKILNDSLI 300
           +N +GNE +K+ KI ND L+
Sbjct: 283 DNTRGNEYEKEQKIRNDELV 302


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 172 PVTYPTNPPAILYTALLGFPITRPNRD 92
           P  YP +PP I++T+    P+  PN D
Sbjct: 85  PANYPYSPPTIIFTS----PMWHPNVD 107


>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -3

Query: 241 KKTANCIGVVVMAQTERSRDEHAPVTYPTNPPAILYTALLGFPITRPN 98
           K     +G+V     +  +D + PVT    P   L T   G  + R N
Sbjct: 156 KLRGKLVGIVTSRDVQFHKDTNTPVTEVMTPREELITTAEGISLERAN 203


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = -1

Query: 327 NENSQRFFNYFEI-----CVFVNTLTFFFSVSHKRKRLIVLVWSSWLRRNDHVTNTRPSL 163
           N NSQRFF + +I      + + + +  ++ SH  K L++L   + L   D  T    ++
Sbjct: 363 NPNSQRFFPFIDIPPVRDMLVIPSSSPHYNGSHNPKNLLLLSEDNSLSLLDISTGNISNM 422

Query: 162 TQPTPLQFC 136
           +   P   C
Sbjct: 423 SLSIPPSLC 431


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -1

Query: 363 KEQSPRKRKKKTNENSQRFFNYFEIC--VFVNTLTFFFSVSHKRKRLIVLV--WSSWLRR 196
           KE    K   K  EN   F + F +      +      SVS K +R+++     + W +R
Sbjct: 7   KELDNNKLVSKAKENGVEFSDLFLLSSGYLRDRENASASVSSKNERMVLNEERQNCWTKR 66

Query: 195 NDHVTNTRPSLTQPTPLQFCTQP 127
           ND    T   L +P+ ++  ++P
Sbjct: 67  NDPKGLTYYQLLKPSEVEILSRP 89


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 394 FKHFN*GHSHRDRLRPSTANA 456
           F HF  GHS  +R + ST+N+
Sbjct: 701 FVHFECGHSVHERCQQSTSNS 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,307
Number of Sequences: 5004
Number of extensions: 50200
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)