Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0523
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0290 - 7130304-7130416,7130999-7131804,7132730-7132937,713...    34   0.085
05_05_0110 + 22470869-22470920,22471044-22471146,22473261-224733...    28   5.6  
11_03_0108 + 10101717-10101724,10101927-10101962,10102242-101023...    28   7.4  
01_06_1289 - 36010924-36011001,36011441-36011518,36012321-360124...    28   7.4  

>03_02_0290 -
           7130304-7130416,7130999-7131804,7132730-7132937,
           7132983-7133153,7134091-7134187,7134814-7134873
          Length = 484

 Score = 34.3 bits (75), Expect = 0.085
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = -1

Query: 375 IFITKEQSPRKRKKKTNENS-QRFFNYFEICVFVNTLTFFFSVSHKRKRLIVLVWSSWLR 199
           +F  +E SP       NE    RFF       F+N L F F     +  +IVL   +W R
Sbjct: 401 VFTAREGSPGWIPDNLNEGHLDRFFWMMAGLCFLNMLAFVFCAMRYKSHIIVLKLGNWFR 460

Query: 198 RN-DHVTNTRPSLTQPTP 148
            + ++V   R   T+  P
Sbjct: 461 SDTNYVQKIRKGGTRTAP 478


>05_05_0110 +
           22470869-22470920,22471044-22471146,22473261-22473358,
           22473430-22473530,22474052-22474129,22474578-22474655
          Length = 169

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 172 PVTYPTNPPAILYTALLGFPITRPNRDTCVT 80
           P  YP +PP++ +T+ +  P   P+   C++
Sbjct: 64  PQNYPNSPPSVRFTSEMWHPNVYPDGRVCIS 94


>11_03_0108 +
           10101717-10101724,10101927-10101962,10102242-10102392,
           10102393-10102551
          Length = 117

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 222 LVWSSWLRRNDHVTNTRPSLT 160
           + W+ WL RND V N  PS++
Sbjct: 42  ICWALWLSRNDLVFNKSPSIS 62


>01_06_1289 -
           36010924-36011001,36011441-36011518,36012321-36012421,
           36012506-36012603,36016213-36016315,36016435-36016486
          Length = 169

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 172 PVTYPTNPPAILYTALLGFPITRPNRDTCVT 80
           P  YP +PP + +T+ +  P   P+   C++
Sbjct: 64  PQNYPNSPPTVRFTSEMWHPNVYPDGRVCIS 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,270
Number of Sequences: 37544
Number of extensions: 285434
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)