Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0523
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)                   29   4.3  
SB_24572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_23533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9)                   27   9.9  

>SB_21454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -1

Query: 363 KEQSPRKRKKKTNENSQRFFNYFEICVFVNTLTFFFSVSHKRKRLIVLVWSSWLRRNDHV 184
           KE     R ++ + N++R FN+ +  +F N   ++F V   R +  +    + L +N   
Sbjct: 13  KEALQLSRNRRLHINNRRKFNFVKTAIFENRRKYYFVVEVFRSKFTI---CNPLLKNTDS 69

Query: 183 TNTRPSL 163
            NT  SL
Sbjct: 70  LNTDSSL 76


>SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)
          Length = 570

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 241 KKTANCIGVVVMAQTERSRDEHAPVTYPTNPPAILYTALLGFPITRPNR 95
           +KT+  + + V +    SR    P T PT PP+   T+    P  R N+
Sbjct: 448 RKTSEDVEMEVTSSRASSRARRKPETSPTKPPSARSTSRGSAPSQRKNK 496


>SB_24572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -3

Query: 184 DEHAPVTYPTNPPAILYTALLGFPITRPNRDTCVTKYLVS 65
           + HA V  PT PPAI     L F      R  C  K L S
Sbjct: 315 NNHAWVELPTEPPAIASVHCLDFEAEGELRSLCQEKALTS 354


>SB_23533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -3

Query: 184 DEHAPVTYPTNPPAILYTALLGFPITRPNRDTCVTKYLVS 65
           + HA    PT PPAI     L F      R  C+ K L S
Sbjct: 312 NNHAWAELPTEPPAITSVHSLDFEAEEELRSLCLEKALTS 351


>SB_59553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1003

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -3

Query: 184 DEHAPVTYPTNPPAILYTALLGFPITRPNRDTC 86
           + HA    PT PPAI     LGF   R  R  C
Sbjct: 97  NNHAWAELPTEPPAIASVHGLGFEAERELRSLC 129


>SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9)
          Length = 745

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -3

Query: 184 DEHAPVTYPTNPPAILYTALLGFPITRPNRDTCVTKYLVS 65
           + HA    PT PPAI     L F +    R  C  K L S
Sbjct: 271 NNHALAELPTEPPAITSVHGLDFEVEGELRSLCQEKALTS 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,334,140
Number of Sequences: 59808
Number of extensions: 366336
Number of successful extensions: 969
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)