Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0523
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-6|AAC48262.1|  340|Caenorhabditis elegans Seven tm rece...    29   2.8  
AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin co...    28   6.6  
Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical pr...    27   8.7  
S56051-1|AAB25489.2|  147|Caenorhabditis elegans ubiquitin-conju...    27   8.7  

>AF000298-6|AAC48262.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 122 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -3

Query: 367 NERTISKETKKKNKRKFSTIL 305
           N+RTISK TK+ NK+ F T++
Sbjct: 231 NKRTISKRTKELNKQLFRTLV 251


>AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein3 protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 172 PVTYPTNPPAILYTALLGFPITRPNRDTCVT 80
           P  YP +PP++ +T  +  P    N D C++
Sbjct: 66  PSNYPYSPPSMKFTTKVWHPNVYENGDLCIS 96


>Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical
           protein M7.1 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 178 HAPVTYPTNPPAILYTALLGFPITRPNRDTCV 83
           H P  YP  PP + +T  +  P    N   C+
Sbjct: 55  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICL 86


>S56051-1|AAB25489.2|  147|Caenorhabditis elegans
           ubiquitin-conjugating enzyme protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 178 HAPVTYPTNPPAILYTALLGFPITRPNRDTCV 83
           H P  YP  PP + +T  +  P    N   C+
Sbjct: 55  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICL 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,950,496
Number of Sequences: 27780
Number of extensions: 281069
Number of successful extensions: 600
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)