Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0523
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.83 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   1.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.4  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.8  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 435 KAIHR*CNYHNDNY*KTNY 491
           K IH   NY+N+NY   NY
Sbjct: 88  KTIHNNNNYNNNNYNNYNY 106


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 435 KAIHR*CNYHNDNY*KTNYIELIFD 509
           K IH   NY+N+NY   NY +L ++
Sbjct: 88  KTIHNNNNYNNNNY--NNYKKLYYN 110


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 453 CNYHNDNY*KTNYIELIFD 509
           CNY N+ Y   NY +L ++
Sbjct: 311 CNYSNNYYNNNNYKKLYYN 329


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 435 KAIHR*CNYHNDNY*KTNY 491
           K IH   NY+N+NY   NY
Sbjct: 321 KTIHNNNNYNNNNY-NNNY 338


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 421 HRDRLRPSTANATXXXXXXKKQTTLNLSSIHH*NRS 528
           H+D L  STA +T      K+Q  + L+S  + N +
Sbjct: 506 HKDSLGLSTATSTCSLAVAKQQNQVPLTSSSNVNNN 541


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 534 YCKKECYGKSHYQSL 578
           YC+  CY + H +S+
Sbjct: 212 YCRLYCYAQKHVKSI 226


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 456 NYHNDNY*KTNYIEL 500
           NY+N+NY   NY +L
Sbjct: 96  NYNNNNYNNNNYKKL 110


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 456 NYHNDNY*KTNYIEL 500
           NY+N+NY   NY +L
Sbjct: 96  NYNNNNYNNNNYKKL 110


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 456 NYHNDNY*KTNYIEL 500
           NY+N+NY   NY +L
Sbjct: 96  NYNNNNYNNNNYKKL 110


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 456 NYHNDNY*KTNYIEL 500
           NY+N+NY   NY +L
Sbjct: 96  NYNNNNYNNNNYKKL 110


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 456 NYHNDNY*KTNYIELIF 506
           NY+N+NY   NY + ++
Sbjct: 97  NYNNNNYNNNNYNKKLY 113



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 456 NYHNDNY*KTNYIELI 503
           NY+N+NY K  Y  +I
Sbjct: 102 NYNNNNYNKKLYYNII 117


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 456 NYHNDNY*KTNYIELIF 506
           NY+N+NY   NY + ++
Sbjct: 97  NYNNNNYNNNNYNKKLY 113



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 456 NYHNDNY*KTNYIELI 503
           NY+N+NY K  Y  +I
Sbjct: 102 NYNNNNYNKKLYYNII 117


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 456 NYHNDNY*KTNY 491
           NY+N+NY   NY
Sbjct: 332 NYNNNNYNNNNY 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,886
Number of Sequences: 438
Number of extensions: 3625
Number of successful extensions: 25
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)