Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0520
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    28   1.7  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    27   3.0  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   5.3  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.0  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   7.0  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   9.2  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   9.2  

>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 21  EHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDLYRAH-CTYTKPTY 167
           EH+ FLDTC  + ++   +  +L V   S+L N+C ++ ++  T+T+  Y
Sbjct: 680 EHIDFLDTCLKECML--TNSRLLKVQ--SKLLNTCAMFASYTSTFTRSLY 725


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 565 MFFVKLMWLSKQAKGMFVISMVILIHILQITACLCKALIFK 443
           + F+ L  L+K+  G+      IL+HIL +TAC    + FK
Sbjct: 195 LIFMFLGLLAKEGSGISWTR--ILVHILSVTACAMVVIGFK 233


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 575 DHLNVFC*AYVAIKTGKGNVCDLNGDFNTYFTDYS 471
           ++L  F   +VA+ + K  +C L  D N Y   +S
Sbjct: 192 ENLATFSTKFVALSSHKNYICGLTNDNNLYILQHS 226


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 488 YFTDYSMPL*GFNI*TT*LMQCSVIKCTRSKSYHPKYKNFDSCVIQL 348
           YF  YS+ + G++I +  L+  S      SK  HP++ N  S V+Q+
Sbjct: 409 YFFLYSLMIYGYSIGSAPLISLS------SKQLHPRHHNTASIVVQV 449


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 637 CCVKL*ELINYYFLFCNEKVMI 572
           CC  L + + ++F+F N+ V++
Sbjct: 464 CCTTLSKFVRHFFMFLNDSVIL 485


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 142 WALYRSQELLNSEVYITDKIPK 77
           WA Y S    N +VY++ K P+
Sbjct: 335 WAYYNSMTQYNLDVYLSSKAPQ 356


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 264 EVLWFD-LVLIIM*KLICLLACLIMKYSVQ 350
           ++LW D L  ++  K+IC LA L +KY ++
Sbjct: 91  KLLWDDGLPALVERKVICTLASLTIKYELE 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,818
Number of Sequences: 5004
Number of extensions: 67770
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)