Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0520
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751...    29   4.1  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   7.2  
12_02_0266 - 16582912-16584918,16585041-16585229                       28   9.6  
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888...    28   9.6  
03_06_0678 - 35480711-35484658                                         28   9.6  

>04_03_0258 -
           13573730-13573816,13573881-13574666,13575043-13575126,
           13575254-13575322,13575324-13576228,13576517-13576784
          Length = 732

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 318 LACLIMKYSVQLNNTTIKIFVLWVVRFTSCAF 413
           +ACLIMK  + +  +T+K+  L  +  ++CAF
Sbjct: 9   VACLIMKLHITIPVSTLKMLELLKLMISACAF 40


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 3   LNPKAVEHLRFLDTCYNQEVIHY-RSLGILSVMYTSELS 116
           + PK + HLR+L+  Y+Q ++     + IL  + T +LS
Sbjct: 591 IQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLS 629


>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 60  VIHYRSLGILSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSRIVDIGFM 206
           V+H R  G  S     +LS  C+L++      +  +F FP  I ++ ++
Sbjct: 380 VLHMRIEGYFSFRAIYDLSPICNLFQLRYLKLEGIFFQFPDTIGELRYL 428


>08_02_0907 -
           22485714-22486859,22487836-22487882,22488456-22488830,
           22489339-22489500,22490325-22490439
          Length = 614

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 PVTYTGPIVPTRNQHISVSPPVS 189
           P +Y GP  P+ + HI++ PP S
Sbjct: 390 PFSYQGPPPPSMHNHINLLPPTS 412


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   LNPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCD 128
           L PK + HLR+LD  Y++       + IL  + T  LS  CD
Sbjct: 590 LKPKYLHHLRYLDLSYSKIEALPEDISILYHLQTLNLS-ICD 630


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,811,645
Number of Sequences: 37544
Number of extensions: 367486
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)