Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0520
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19727| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   5e-09
SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30)                  29   3.2  
SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)              29   4.2  
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   5.6  
SB_58586| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_6516| Best HMM Match : DUF708 (HMM E-Value=8.5)                     28   9.8  

>SB_19727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 26/83 (31%), Positives = 41/83 (49%)
 Frame = +3

Query: 6   NPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDLYRAHCTYTKPTYFSFPSR 185
           NP +  + + +   + Q  +  +S G+ S+M  +E    CDLY  HC YTK  +      
Sbjct: 103 NPSSDVYTQEMLQLFYQGKLRRQSFGLFSLMMQTEFGKDCDLYEQHCYYTKTRWVDLWKY 162

Query: 186 IVDIGFMGKWWNLFIKSTNYDVN 254
           + D G +G W+ L     +YDVN
Sbjct: 163 VRDFGILGHWYKLETAMIDYDVN 185


>SB_21545| Best HMM Match : FerB (HMM E-Value=3.1e-30)
          Length = 1142

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 267 VLWFDLVLIIM*KLICLLACLIMKYSVQLNNTTIKIFVLWVVRFTSCA 410
           V + +++L+ + + + L   L     V ++ T + IFV+WVV  T+ A
Sbjct: 647 VSFLNILLVTLDRFLALFLHLRYNSMVTMHRTRLAIFVIWVVGATNSA 694


>SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)
          Length = 532

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -2

Query: 346 TEYFIIRQANKHINFHIIISTRSNHKTS 263
           T + ++ Q +KH+ +H++++T S H T+
Sbjct: 475 TYHSMLTQPSKHLTYHVMLTTLSKHLTN 502


>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1239

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 403 EVNLTTQSTKILIVVLFNCTEYFIIRQANKHIN 305
           E+  T   TK+ I  L N TE  ++ + +KH+N
Sbjct: 843 ELKATVNLTKVSIPYLGNSTERSVLSEGDKHVN 875


>SB_58586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 607 YYFLFCNEKVMII*MFFVKLMWLSKQAKGMFVISMVILIHILQITACLCKAL 452
           YY LF N+KV I+ +  V + WL      + V  ++I++ +  + A  C ++
Sbjct: 62  YYPLF-NQKVEILMIMIVAVFWLKLTLVMIIVAEVMIIMMLGGLLATTCSSI 112


>SB_6516| Best HMM Match : DUF708 (HMM E-Value=8.5)
          Length = 159

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 607 YYFLFCNEKVMII*MFFVKLMWLSKQAKGMFVISMVILIHILQITACLCKAL 452
           YY LF N+KV I+ +  V + WL      + V  ++I++ +  + A  C ++
Sbjct: 62  YYPLF-NQKVEILMIMIVAVFWLKLTLVMIIVAEVMIIMMLGGLLATTCSSI 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,670,305
Number of Sequences: 59808
Number of extensions: 474004
Number of successful extensions: 836
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)