Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0520
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74475-4|CAD01086.1|  185|Caenorhabditis elegans Hypothetical pr...    43   3e-04
AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical ...    36   0.032
Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    29   4.9  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    29   4.9  

>Z74475-4|CAD01086.1|  185|Caenorhabditis elegans Hypothetical
           protein R04F11.5 protein.
          Length = 185

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   NPKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDLYRAHCTYTKP-TYFSFPS 182
           NP   + L   D   +Q  +HY +L   S++  S+ ++   +Y +  +  K   +     
Sbjct: 89  NPATTKELTARDFLISQNRLHYYNLWFFSLLVASDYNDKLRIYSSQDSNLKDWPWTELWR 148

Query: 183 RIVDIGFMGKWWNLFIKSTNYDVN 254
            IVDIG +G+W  +     +YDVN
Sbjct: 149 NIVDIGALGRWHRMETAFVDYDVN 172


>AF067940-4|AAC19201.1|  487|Caenorhabditis elegans Hypothetical
           protein F36F12.2 protein.
          Length = 487

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 9   PKAVEHLRFLDTCYNQEVIHYRSLGILSVMYTSELSNSCDLYRAH---CTYTKPTYFSFP 179
           PK   +   +  CYNQ   H R  G+LS   T   +  C+L +     CT++  TY S P
Sbjct: 405 PKDDFYTNIVFQCYNQSFYHIRDAGLLSAESTCVNAFDCELSQREAMPCTHSDATYHSGP 464


>Z81533-6|CAB04339.1|  347|Caenorhabditis elegans Hypothetical
           protein F36G9.9 protein.
          Length = 347

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -2

Query: 649 HLHACCVKL*ELINYYFLF-CNEKVMII*MFFVKLMWLSKQAKGMFVISMVILIHILQIT 473
           H+   CV + ELI+  FLF C  ++ I  +  + L+W+S ++     IS+      LQ+ 
Sbjct: 186 HVFIVCVVV-ELIHVIFLFSCFFRLGIGMVTVIVLIWMSSRSLKSIQISLTTKRMHLQLI 244

Query: 472 ACLCKALI 449
             LC+ +I
Sbjct: 245 KSLCQQII 252


>Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 9   PKAVEHLRFLDTCY--NQEVIHYRSLGILSVMYTSELSNSCDLYRAHC 146
           P A+ +L F  T    ++EVIH+  L +LSV+ + E      L RA C
Sbjct: 328 PTALFYLLFSPTTIQDDEEVIHWHRLSLLSVVTSEEAEELKPLSRAMC 375


>Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 9   PKAVEHLRFLDTCY--NQEVIHYRSLGILSVMYTSELSNSCDLYRAHC 146
           P A+ +L F  T    ++EVIH+  L +LSV+ + E      L RA C
Sbjct: 328 PTALFYLLFSPTTIQDDEEVIHWHRLSLLSVVTSEEAEELKPLSRAMC 375


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 306 LICLLACLIMKYSVQLNNTTIKIFVLWVVRFTSCA 410
           LICL    I+ Y V  +++ + +  LW+  F+ C+
Sbjct: 24  LICLACVGILAYCVSTSHSIVLMSTLWITIFSFCS 58


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 306 LICLLACLIMKYSVQLNNTTIKIFVLWVVRFTSCA 410
           LICL    I+ Y V  +++ + +  LW+  F+ C+
Sbjct: 42  LICLACVGILAYCVSTSHSIVLMSTLWITIFSFCS 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,485,220
Number of Sequences: 27780
Number of extensions: 374981
Number of successful extensions: 615
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)