Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0520
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05620.1 68416.m00624 pectinesterase family protein contains ...    30   2.0  
At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1) domain...    29   4.6  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    29   4.6  

>At3g05620.1 68416.m00624 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 543

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 397 LLLVHLMTEHCISYVV*ILKPYK 465
           LLLV LM+ H  SY   ILKPYK
Sbjct: 7   LLLVMLMSVHTSSYETTILKPYK 29


>At3g18230.1 68416.m02319 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 666

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 245 IVCRFYKQVPPFPHESNINDTGGETEI 165
           ++C F   + P PH+ ++  +GGET I
Sbjct: 66  LMCSFGGHIMPRPHDKSLTYSGGETRI 92


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 91  LLCIPQN*AIPVTYTGPIVPTRNQHISVSPPVSLILD 201
           L CI QN A+ VTY   + P ++ HIS  P  ++I D
Sbjct: 676 LPCIEQNRALNVTY---LCPAKHSHISEPPRGAIIPD 709


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,444
Number of Sequences: 28952
Number of extensions: 324901
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)