Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0518
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0297 - 23921648-23921758,23922011-23922089,23922774-239228... 31 0.75
04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215 31 1.00
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 31 1.3
03_06_0316 + 33091194-33091370,33091451-33092155 29 3.0
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 29 3.0
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 4.0
10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904... 29 5.3
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513... 29 5.3
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839... 28 7.0
02_03_0130 + 15567200-15567562 28 7.0
05_03_0035 - 7592177-7592938 28 9.3
>05_05_0297 -
23921648-23921758,23922011-23922089,23922774-23922822,
23923180-23923255,23923693-23923767,23923862-23923992,
23924830-23924935
Length = 208
Score = 31.5 bits (68), Expect = 0.75
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 334 PDNKRSKIEQMFELQHLKTKFPS-AQKAQGAPQSSGKSHDEPKTAPKSAAEREIGK 170
P ++SK E +LQ ++ PS AQ+A G P+ K + P + A REI K
Sbjct: 7 PAVRKSKAEPKKKLQFERSPRPSKAQRAGGTPRQQTKQRKPHRFRPGTVALREIRK 62
>04_04_0514 - 25816808-25817318,25817865-25817994,25818083-25818215
Length = 257
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -2
Query: 349 IIVLLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAA 188
I LP ++I+ ++ HLK + + + S GK H +PK+A K AA
Sbjct: 92 IAARLPGRTDNEIKNVWHT-HLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAA 144
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 30.7 bits (66), Expect = 1.3
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Frame = -2
Query: 724 VLLGLDR--HEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRL 551
VL GLD E +S RK+++ G + P V L + CT++ L C
Sbjct: 322 VLQGLDVIVREASSWRKIIIGQGFYSQGRSVPIGPDVVALKGTQQTLKCTQKGLILCVDY 381
Query: 550 G-SNTNKPRPIL------VRFLSLRRCNEVWKNKTL---LKGSRVIISEFLTKSRHDV 407
K P+L VR+L R + TL LKG RV ++ TK ++ V
Sbjct: 382 SVMPFRKAGPVLDLVQKSVRYLDYRTTLNKHQLDTLKNELKGQRVTVNHRRTKQKYIV 439
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -2
Query: 340 LLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTA--PKSAAE 185
L+ K +K++ ++L T+ P+A K + P ++ K +PK A PK+AA+
Sbjct: 106 LVAAGKLTKVKNSYKLP--PTRAPAAAKPKAKPAAAAKPKPKPKAAAKPKAAAK 157
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Frame = -2
Query: 487 EVWKNKTLLKGSRVIISEFLTKSRHDVFLEA--RSHFGVKRCWTTDGKIIVLLPDNKRSK 314
E+WKN K + F RHD L + G + T+D +V + +S
Sbjct: 364 ELWKNGLPEKEQKYATGFFTVIKRHDALLPSILAQSDGSNQTKTSDDLFVVPYSEEYKSS 423
Query: 313 IEQMFELQH 287
+E+ EL H
Sbjct: 424 LEKAAELLH 432
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 292 QHLKTKFPSA---QKAQGAPQSSGKSHDEPKTAPKSAAEREIGKRTTRRK 152
+H KTK S +K++ + +SS D KT S+ G+RTTR K
Sbjct: 237 KHKKTKRKSRGTKRKSKRSYRSSSDDSDSSKTGGSSSDSESEGRRTTRTK 286
>10_08_0628 +
19389508-19389637,19389774-19389850,19390332-19390438,
19390545-19390626,19390702-19390814,19391023-19391086,
19391192-19391266,19391691-19391807,19392131-19392199,
19392319-19392411,19392733-19392835,19393040-19393164,
19393317-19393366,19393477-19393543,19393663-19393742,
19394038-19394166,19394274-19394340,19394429-19394512
Length = 543
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -2
Query: 727 LVLLGLDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKVAGCTEEDL-TACYRL 551
+ L L+R+ + L HGIP+ +ATD A+ I K G D+ T+ YR
Sbjct: 395 IALSALERYVFKGKSPFTLKHGIPDHEATDMASLHSPI--QYPKPDGQISFDVPTSLYRS 452
Query: 550 GSNTNKPRP 524
+N +P
Sbjct: 453 STNHEHDQP 461
>06_03_0613 +
22748223-22749513,22750046-22750179,22751066-22751309,
22751401-22751609,22751691-22751740,22751933-22752053,
22752138-22752383
Length = 764
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -1
Query: 263 SKSARSSSVIWEIS*RTQDGTKISGRARNRQEDDSSKVVWRYLELIHRCNTKNLV 99
S +SS V+ + + QDG+++S R + S + + +Y+E+I + ++LV
Sbjct: 465 SNLIKSSPVVKHYNGQLQDGSRVSLRCLKLKPKYSPQSLTQYMEIISKLRHRHLV 519
>04_04_1271 -
32282865-32283167,32283429-32283561,32283683-32283908,
32284058-32284274,32284398-32284558,32285309-32285449,
32285621-32286944
Length = 834
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 264 AEGNLVFRC*SSNICSILLRLLSGRRTIIFPSVVQQ 371
A+GNL +C + +LL ++SG+R P+ +++
Sbjct: 699 AQGNLTLKCDVYSFGVVLLEIISGKRNRTLPTFLRE 734
>02_03_0130 + 15567200-15567562
Length = 120
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 655 PGFHETEGPYDATPSHACPTPREQAPSVTS 744
PG ++ P DA P CP+P Q+ +TS
Sbjct: 46 PGKPKSPPPLDAAPPLLCPSPAMQSARLTS 75
>05_03_0035 - 7592177-7592938
Length = 253
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 283 KTKFPSAQKAQGAPQ--SSGKSHDEPKTAPKSAAERE 179
KT+ S KA+ P+ S KS EP++ P++ AER+
Sbjct: 194 KTEPKSESKAEPKPERKSYSKSKPEPESKPEAKAERQ 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,043,610
Number of Sequences: 37544
Number of extensions: 456778
Number of successful extensions: 1295
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -