Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0518
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 29 2.7
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 29 2.7
U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna syn... 29 3.6
U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna syn... 29 3.6
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 28 8.3
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 28 8.3
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 28 8.3
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 28 8.3
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 472 KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 296
KT++ S + + EFL + R L+ + ++ C I +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350
Query: 295 LQHLKTKFPSAQK 257
LQ +K + A +
Sbjct: 1351 LQRVKQRTEEANR 1363
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 472 KTLLKGSRVIISEFLTKSRHDVFLEARSHFGVKR-CWTTDGKIIVLLPDNKRSKIEQMFE 296
KT++ S + + EFL + R L+ + ++ C I +L DN++ K E MFE
Sbjct: 1294 KTIVP-SILSLREFLNQHRSP--LQRKCLLAIRMICIEHKNDIDEILQDNRQLKDEMMFE 1350
Query: 295 LQHLKTKFPSAQK 257
LQ +K + A +
Sbjct: 1351 LQRVKQRTEEANR 1363
>U00037-4|AAU20840.1| 454|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform b protein.
Length = 454
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 325 KRSKIEQMFELQHLKTKFPSAQK--AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 161
K+ I+++ L+ L K + Q+ A A QS K ++PK PK +++ GK+ T
Sbjct: 32 KKEAIDKLLALK-LTYKEVTGQEYAAPNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87
>U00037-3|AAA50660.1| 581|Caenorhabditis elegans Prolyl trna
synthetase protein1, isoform a protein.
Length = 581
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 325 KRSKIEQMFELQHLKTKFPSAQK--AQGAPQSSGKSHDEPKTAPKSAAEREIGKRTT 161
K+ I+++ L+ L K + Q+ A A QS K ++PK PK +++ GK+ T
Sbjct: 32 KKEAIDKLLALK-LTYKEVTGQEYAAPNARQSKPKKEEKPKQQPKQQEKKQDGKKQT 87
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 661 IPESDATDPATAIVGILTNQMKVAGCTEEDLTACYRL 551
+P + D A + IL ++ + TEE+L A YRL
Sbjct: 769 VPREELIDLARELFAILLDEWATSFVTEEELEALYRL 805
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 679 PYDATPSHACPTPREQAPS 735
P A PS A PTPR APS
Sbjct: 361 PKSAVPSEAPPTPRSAAPS 379
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 679 PYDATPSHACPTPREQAPS 735
P A PS A PTPR APS
Sbjct: 311 PKSAVPSEAPPTPRSAAPS 329
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 679 PYDATPSHACPTPREQAPS 735
P A PS A PTPR APS
Sbjct: 361 PKSAVPSEAPPTPRSAAPS 379
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 679 PYDATPSHACPTPREQAPS 735
P A PS A PTPR APS
Sbjct: 361 PKSAVPSEAPPTPRSAAPS 379
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,015,079
Number of Sequences: 27780
Number of extensions: 390930
Number of successful extensions: 1029
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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