Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0518
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79190.1 68414.m09233 expressed protein                             32   0.48 
At5g54620.1 68418.m06801 ankyrin repeat family protein contains ...    29   3.4  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    29   3.4  
At2g31600.2 68415.m03861 expressed protein                             29   3.4  
At2g31600.1 68415.m03860 expressed protein                             29   3.4  
At4g32670.1 68417.m04651 expressed protein ; expression supporte...    28   5.9  
At5g40450.1 68418.m04905 expressed protein                             28   7.7  
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end...    28   7.7  
At1g33880.1 68414.m04200 avirulence-responsive family protein / ...    28   7.7  

>At1g79190.1 68414.m09233 expressed protein
          Length = 1274

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = +1

Query: 109  LVLHL*ISSRYRHTTFDESSSCRFLALPLILVPSWVRHEIS-QMTEE-LLALFEPRETWF 282
            ++L L  S RYR T    +SSC   A PL+   + V   +S ++ EE ++AL +  E + 
Sbjct: 935  ILLELNRSKRYRRTVGSIASSCLIAATPLLASSNQVSCLVSLEIIEEGVVALAKVEEAYR 994

Query: 283  SDAEVQTSVQ 312
            ++ E + +++
Sbjct: 995  AETETKETIE 1004


>At5g54620.1 68418.m06801 ankyrin repeat family protein contains
           Pfam domain, PF00023: Ankyrin repeat
          Length = 431

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 474 FFHTSLHRLKLRNLTNIGLGLLVLEPNR*QAVKSSSVQP 590
           F HT LH       T++ + L+VL+P   + + S  V P
Sbjct: 36  FVHTPLHEASSTGKTDLAMELMVLKPTFAKKLNSDGVSP 74


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 511 FLSLRRCNEVWKNKTLLKGSRVIISEFLTKSRHD 410
           F   R C++  K   L+ G ++I+ E  TKSR+D
Sbjct: 230 FQRSRPCDKTRKRWLLMTGDKLILVEMCTKSRYD 263


>At2g31600.2 68415.m03861 expressed protein
          Length = 216

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 713 VGQA*DGVAS*GPSVSWNPGVRCHRPSNSNCG 618
           +G   D V   G +V+ N GV+  + +NSNCG
Sbjct: 144 IGDGGDAVEGSGDNVTNNDGVKSDQYANSNCG 175


>At2g31600.1 68415.m03860 expressed protein
          Length = 301

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 713 VGQA*DGVAS*GPSVSWNPGVRCHRPSNSNCG 618
           +G   D V   G +V+ N GV+  + +NSNCG
Sbjct: 144 IGDGGDAVEGSGDNVTNNDGVKSDQYANSNCG 175


>At4g32670.1 68417.m04651 expressed protein ; expression supported
           by MPSS
          Length = 808

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 736 QMELVLLGLDRHEMASRRKVLLFHGIPESDATDPATAIVGILTNQMKV 593
           QME + + L RH    RR ++L +G+ + D     T IV +L N +++
Sbjct: 95  QMETIRVLLRRHPEFLRRMIILENGLKDRD----VTGIVLLLANHLQI 138


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -2

Query: 358  DGKIIVLLPDNKRSKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPKTAPKSAAERE 179
            DG   V     + S IE+  E++H+K +   A K + + +    + +          E+E
Sbjct: 2646 DGHDSVAAQKEETSSIEEKREVEHVKAEMEDAIKHEVSVEEKNNTSENIDHEAAKEIEQE 2705

Query: 178  IGKRT 164
             GK+T
Sbjct: 2706 EGKQT 2710


>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291 A short intron was annotated between exons
           4 and 5 to circumvent a frameshift.   The frameshift may
           be artificial due to a sequencing error, or
           alternatively is genuine suggesting a truncated protein
           or pseudogene.
          Length = 495

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 172 CRFLALPLILVPSWVRHEISQMTEELLALFEPRETWFSDAE 294
           C F+ + LIL+P+ + H+ S    + +  FE + + +   E
Sbjct: 6   CSFIVILLILLPTTISHDYSDALTKSILFFEGQRSGYLPRE 46


>At1g33880.1 68414.m04200 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
           Pfam PF04548: AIG1 family;
          Length = 234

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 323 FIIREKDDYFPICCPAALNAEMR 391
           F  +E +DYFP CCP  L   +R
Sbjct: 150 FEAKEFEDYFPECCPEFLMRVLR 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,019,914
Number of Sequences: 28952
Number of extensions: 367680
Number of successful extensions: 1012
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)