Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0517
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    32   0.078
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    32   0.078
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.7  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    27   2.2  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   2.9  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   3.9  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    26   3.9  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   3.9  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    26   5.1  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   6.8  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   9.0  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   9.0  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   9.0  

>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 31.9 bits (69), Expect = 0.078
 Identities = 30/121 (24%), Positives = 49/121 (40%)
 Frame = +2

Query: 116 FCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLSTTFMHVMPEVQ 295
           FC     G+    +  K  W   E      S N +V T L+   G+LL +++  VM E  
Sbjct: 45  FCVFGASGIYLDKLVNK--WFGYEVLDLANSDNALV-TGLATSSGILLYSSWASVMQESF 101

Query: 296 ENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHIYIHHREKNNGQTDLLVRNLS 475
             +E +        FD  L  +   C FF   ++  + + ++H     + QT  L  + S
Sbjct: 102 HFLEKISM------FDTFLVRVFQFCAFFFGGIVFYIFNHFLHKWLHESSQTGFLHDHFS 155

Query: 476 V 478
           V
Sbjct: 156 V 156


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 31.9 bits (69), Expect = 0.078
 Identities = 17/64 (26%), Positives = 34/64 (53%)
 Frame = +2

Query: 239 FGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHIY 418
           FG GV+L+T F+H++      + +    ++   +D++    L  C F +  L+E L++ Y
Sbjct: 106 FGSGVILATAFIHLLAPACNKLYDPCLDDLFGGYDWAPGICLISCWFIL--LLEVLLNRY 163

Query: 419 IHHR 430
           +  R
Sbjct: 164 VEWR 167


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 458 LVRNLSVRKSRCTEGHSNEAKNST-ESGIESPEKNREHEANNPQSRKS 598
           L+R+    KS+   G  + A   T E+G++  E     E+  P +RKS
Sbjct: 499 LMRSFVPNKSKSPSGTKSPASGETSEAGVKETETTTSSESALPDARKS 546


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 8   HRANRQTNKMAYRHSHDHDDDTDGIV 85
           +R    T  +A    +D+DDDTDGI+
Sbjct: 291 NRLAEMTAHLAESSDYDNDDDTDGII 316


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +2

Query: 95  GISMVVLFCASMICG--LIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLSTT 268
           G+S +V++ A +I    L+      +      E +GT K   R+ M L    GG L+  T
Sbjct: 130 GLSSIVVYKAELITSSMLLDTFQTMESNQEMYELSGTRKMRRRIAMGLAGLAGGALIGLT 189

Query: 269 FMHVMPEVQENIENLQA 319
                P V   +  L A
Sbjct: 190 GGLAAPFVAAGLGTLFA 206


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 473 SVRKSRCTEGHSNEAKNSTESGIESPEKNREHEANNPQSRKSTHSP 610
           ++ KS     +S + +    + +E  ++N  HE+  P+S  ST +P
Sbjct: 121 NIVKSESEPANSKQNEVVEATSVEKAKENVAHESGTPESGGSTSAP 166


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -3

Query: 264 VESSTPPPKESRVITTRFVDLNVPASSTESHRNFLAMI*GIRPHIMEAQKSTTM--EMPL 91
           VE   P P+E   I        +P     SH+N +A++  I  H+ E      +   +PL
Sbjct: 231 VEPDPPSPEEICCIMYTSGSTGLPKGVILSHKNMVAIVTAIVKHVPEVTSKDYLLAYLPL 290

Query: 90  ANTI 79
           A+ +
Sbjct: 291 AHIL 294


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +2

Query: 479 RKSRCTEGHSNEAKNSTESGIESPEKNREHEANNPQSRKSTHSPHAYTG 625
           + +R  EG+ N A      G  SP +   H A  P    S  S  A TG
Sbjct: 58  KTNRECEGYPNSAAQMQAMGSVSPPELSVHSAQQPLIPTSIASSSAQTG 106


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 522 TLLNPELNHPKRIGNMKRTTHNH 590
           T++ P  N  KRIGNM + T +H
Sbjct: 65  TVIVPAYNESKRIGNMLQETVDH 87


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 424 MNVYVHQFFYQIHYEEAAARQ*GSQ*EIKFLENVPRLQIFNVLLDFRH 281
           +++Y+ +FF  + Y+ AA    GSQ  +K ++N     I +    ++H
Sbjct: 513 LDMYIQKFFDYVGYQTAALAACGSQSFLKRIKNSVNKSISSTTDIYQH 560


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 374 GFFIMYLIEELVHIYIHHREKNNGQ-TDL 457
           G  + Y+  +L H ++HHR   N   TDL
Sbjct: 274 GAILGYVFYDLTHYFLHHRRMPNAYLTDL 302


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 512 EAKNSTESGIESPEKNREHEANNPQSRK 595
           E        I+ PE ++E EA+N  SRK
Sbjct: 434 EQYRKMSKSIKKPEPSKEREASNTTSRK 461


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 185 EDAGTFKSTNRVV--MTLLSFGGGVLLSTTFMHVMPEVQENIEN 310
           E+A T ++T  VV  +TL+ FGG        +H+   V  ++++
Sbjct: 417 ENAQTLRATTLVVVVLTLIIFGGTTARMLEILHIETGVAADVDS 460


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 322 EHSPRI*FLTDSPIDVLRLLHNVSDRRIGAHIHSSQREE 438
           EHS R  +   SP+D L L H   +R++      S+ E+
Sbjct: 34  EHSKRSGYHGLSPLDALALKHRDLNRKLNLRAMMSKSED 72


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 308 NLQARNILQEFDFSLTPLLTCCG---FFIMYLIEE 403
           N+Q    LQ  +FS  P++  CG   + + Y++E+
Sbjct: 417 NIQKVQWLQPSEFSSRPVIVICGEDAYTVAYIVED 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,351
Number of Sequences: 5004
Number of extensions: 57005
Number of successful extensions: 178
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)