Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0517
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55910.1 68414.m06412 metal transporter, putative (ZIP11) sim... 41 6e-04
At2g30080.1 68415.m03660 metal transporter, putative (ZIP6) iden... 40 0.001
At5g62160.1 68418.m07801 metal transporter, putative (ZIP12) ide... 39 0.003
At1g05300.2 68414.m00537 metal transporter, putative (ZIP5) iden... 34 0.089
At1g05300.1 68414.m00536 metal transporter, putative (ZIP5) iden... 34 0.089
At2g32270.1 68415.m03944 zinc transporter (ZIP3) identical to zi... 33 0.12
At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putat... 28 0.13
At5g47110.1 68418.m05808 lil3 protein, putative similar to Lil3 ... 31 0.47
At5g45105.1 68418.m05535 metal transporter, putative (ZIP8) simi... 31 0.47
At4g19690.2 68417.m02892 iron-responsive transporter (IRT1) iden... 31 0.47
At4g19690.1 68417.m02891 iron-responsive transporter (IRT1) iden... 31 0.47
At5g27860.1 68418.m03342 expressed protein 31 0.63
At1g31260.1 68414.m03826 metal transporter, putative (ZIP10) ide... 31 0.63
At2g04032.1 68415.m00373 metal transporter, putative (ZIP7) iden... 31 0.83
At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi... 30 1.4
At4g17600.1 68417.m02632 lil3 protein identical to Lil3 protein ... 29 1.9
At4g04390.1 68417.m00627 Ulp1 protease family protein contains P... 29 1.9
At3g12750.1 68416.m01592 zinc transporter (ZIP1) identical to pu... 29 1.9
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 29 3.3
At5g01590.1 68418.m00074 expressed protein 29 3.3
At4g19680.1 68417.m02890 iron-responsive transporter (IRT2) memb... 29 3.3
At1g66680.1 68414.m07579 S locus-linked protein, putative simila... 29 3.3
At1g60960.1 68414.m06862 metal transporter, putative (IRT3) iden... 28 4.4
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr... 27 7.7
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi... 27 7.7
>At1g55910.1 68414.m06412 metal transporter, putative (ZIP11)
similar to putative zinc transporter ZIP2 [Arabidopsis
thaliana] gi|3252868|gb|AAC24198; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 326
Score = 41.1 bits (92), Expect = 6e-04
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 3/151 (1%)
Frame = +2
Query: 56 DHDDDTDGIVLAKGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLL 235
DHDDD V + + L + C +I ++ ++S K + ++
Sbjct: 26 DHDDDEASHVKSSDLKSKSLISVKIACLVIIFVLT----FISGVSPYFLKWSQGFLVLGT 81
Query: 236 SFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFD--FSLTPLLTCCGFFIMYLIEELV 409
F GGV L+T MH + + E L E + +L C GF + L + ++
Sbjct: 82 QFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVI 141
Query: 410 -HIYIHHREKNNGQTDLLVRNLSVRKSRCTE 499
HIY K +L + S ++S TE
Sbjct: 142 AHIY----SKTQNDLELQGEDKSNQRSATTE 168
>At2g30080.1 68415.m03660 metal transporter, putative (ZIP6)
identical to putative metal transporter ZIP6
[Arabidopsis thaliana] gi|17385786|gb|AAL38433; similar
to zinc transporter protein ZIP1 [Glycine max]
gi|15418778|gb|AAK37761; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 341
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/72 (26%), Positives = 37/72 (51%)
Frame = +2
Query: 212 NRVVMTLLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMY 391
++ ++ + F GV+LST+ +HV+PE E++ + Q + DF L+T G
Sbjct: 59 DKAILVIKCFAAGVILSTSLVHVLPEAFESLADCQVSSRHPWKDFPFAGLVTMIGAITAL 118
Query: 392 LIEELVHIYIHH 427
L++ ++ H
Sbjct: 119 LVDLTASEHMGH 130
>At5g62160.1 68418.m07801 metal transporter, putative (ZIP12)
identical to putative metal transporter ZIP12
[Arabidopsis thaliana] gi|17385794|gb|AAL38437; similar
to zinc transporter protein ZIP1 [Glycine max]
gi|15418778|gb|AAK37761; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 355
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 203 KSTNRVVMTLLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFF 382
K+ + M + +F GV+L+T F+H++P+ E++ + DF +T L+
Sbjct: 73 KTESNFFMYVKAFAAGVILATGFVHILPDATESLTSSCLGEEPPWGDFPMTGLVAMAASI 132
Query: 383 IMYLIEELVHIYIHH-REKNNGQT 451
+ LIE Y++ R G+T
Sbjct: 133 LTMLIESFASGYLNRSRLAKEGKT 156
>At1g05300.2 68414.m00537 metal transporter, putative (ZIP5)
identical to putative metal transporter ZIP5
[Arabidopsis thaliana] gi|17385784|gb|AAL38432; similar
to zinc transporter protein ZIP1 [Glycine max]
gi|15418778|gb|AAK37761; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 267
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 236 SFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHI 415
+F GV+L+T FMHV+PE E + + + EF F T + + ++
Sbjct: 88 AFAAGVILATGFMHVLPEGYEKLTSPCLKGEAWEFPF--TGFIAMVAAILTLSVDSFATS 145
Query: 416 YIH 424
Y H
Sbjct: 146 YFH 148
>At1g05300.1 68414.m00536 metal transporter, putative (ZIP5)
identical to putative metal transporter ZIP5
[Arabidopsis thaliana] gi|17385784|gb|AAL38432; similar
to zinc transporter protein ZIP1 [Glycine max]
gi|15418778|gb|AAK37761; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 360
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 236 SFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCCGFFIMYLIEELVHI 415
+F GV+L+T FMHV+PE E + + + EF F T + + ++
Sbjct: 88 AFAAGVILATGFMHVLPEGYEKLTSPCLKGEAWEFPF--TGFIAMVAAILTLSVDSFATS 145
Query: 416 YIH 424
Y H
Sbjct: 146 YFH 148
>At2g32270.1 68415.m03944 zinc transporter (ZIP3) identical to zinc
transporter [Arabidopsis thaliana]
gi|3252870|gb|AAC24199; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 339
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 236 SFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFS 349
+F GV+L+T FMHV+PE E + + + EF F+
Sbjct: 93 AFAAGVILATGFMHVLPEAYEMLNSPCLTSEAWEFPFT 130
>At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putative
similar to IAA-alanine resistance protein 1 [Arabidopsis
thaliana] SWISS-PROT:Q9M647; contains ZIP Zinc
transporter domain, Pfam:PF02535; identical to cDNA
IAA-alanine resistance protein 1 mRNA GI:6942042
Length = 469
Score = 28.3 bits (60), Expect(2) = 0.13
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +2
Query: 53 HDHDDDTDGIVLAKGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTL 232
HDHD ++ + + + L C S++ L I + V+ K + V +L
Sbjct: 92 HDHDHESSSTLTGFALWLNALGC-SLLVSLASLICLVLLPIMFVQG----KPSKWFVDSL 146
Query: 233 LSFGGGVLLSTTFMHVMP 286
FG G +L F+H +P
Sbjct: 147 ALFGAGAMLGDAFLHQLP 164
Score = 23.8 bits (49), Expect(2) = 0.13
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 47 HSHDHDDDTD 76
HSHDHD D D
Sbjct: 47 HSHDHDHDHD 56
>At5g47110.1 68418.m05808 lil3 protein, putative similar to Lil3
protein [Arabidopsis thaliana] gi|4741966|gb|AAD28780
Length = 258
Score = 31.5 bits (68), Expect = 0.47
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 24 KQTKWLTDTAMTTMTIQMVLYWPKAFPWW 110
K+ KWL D TT ++V++ PWW
Sbjct: 131 KRRKWLEDNPETTSNDELVVFDTSIIPWW 159
>At5g45105.1 68418.m05535 metal transporter, putative (ZIP8) similar
to putative metal transporter ZIP8 [Arabidopsis
thaliana] gi|18997103|gb|AAL83293; similar to
iron-regulated transporter 1 [Lycopersicon esculentum]
gi|9716481|gb|AAF97509; member to the Zinc (Zn2+)-Iron
(Fe2+) Permease (ZIP) family, PMID:11500563
Length = 315
Score = 31.5 bits (68), Expect = 0.47
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 65 DDTDGIVLAKGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFG 244
D T + L K +++V + SMI G+ + +R +L + ++ M + F
Sbjct: 43 DKTKALPL-KIVAIVAILVTSMI-GVAAPLFSRYVTFLHPD--------GKIFMIIKCFA 92
Query: 245 GGVLLSTTFMHVMPEVQENIEN 310
G++L T FMHV+P+ E + +
Sbjct: 93 SGIILGTGFMHVLPDSFEMLSS 114
>At4g19690.2 68417.m02892 iron-responsive transporter (IRT1)
identical to Fe(II) transport protein [Arabidopsis
thaliana] gi|1353266|gb|AAB01678; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 339
Score = 31.5 bits (68), Expect = 0.47
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 92 KGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLSTTF 271
K I++ V+ ASMI G+ + +R +L + + + F G++L T F
Sbjct: 44 KVIAIFVILIASMI-GVGAPLFSRNVSFLQPD--------GNIFTIIKCFASGIILGTGF 94
Query: 272 MHVMPEVQENIENL-QARNILQEFDFS 349
MHV+P+ E + ++ N +F FS
Sbjct: 95 MHVLPDSFEMLSSICLEENPWHKFPFS 121
>At4g19690.1 68417.m02891 iron-responsive transporter (IRT1)
identical to Fe(II) transport protein [Arabidopsis
thaliana] gi|1353266|gb|AAB01678; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 211
Score = 31.5 bits (68), Expect = 0.47
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 92 KGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKSTNRVVMTLLSFGGGVLLSTTF 271
K I++ V+ ASMI G+ + +R +L + + + F G++L T F
Sbjct: 52 KVIAIFVILIASMI-GVGAPLFSRNVSFLQPD--------GNIFTIIKCFASGIILGTGF 102
Query: 272 MHVMPEVQENIENL-QARNILQEFDFS 349
MHV+P+ E + ++ N +F FS
Sbjct: 103 MHVLPDSFEMLSSICLEENPWHKFPFS 129
>At5g27860.1 68418.m03342 expressed protein
Length = 177
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 422 HHREKNNGQTDLLVR--NLSVRKSRCTEGHSNEAKNSTESGIESPEKNREHE 571
HHR + + L VR + S K R HS+++ +S+ S S + EHE
Sbjct: 28 HHRRNDRDRDSLKVRKKSRSTSKKRRRRQHSSDSSDSSYSDSSSESSDSEHE 79
>At1g31260.1 68414.m03826 metal transporter, putative (ZIP10)
identical to putative metal transporter ZIP10
[Arabidopsis thaliana] gi|17385792|gb|AAL38436; similar
to iron-regulated transporter 2 GB:AAD30549 GI:4836773
from [Lycopersicon esculentum]; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 364
Score = 31.1 bits (67), Expect = 0.63
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 236 SFGGGVLLSTTFMHVMPEVQENIEN 310
SF G++LST FMHV+P+ E + +
Sbjct: 91 SFASGIILSTGFMHVLPDSFEMLSS 115
>At2g04032.1 68415.m00373 metal transporter, putative (ZIP7)
identical to putative metal transporter ZIP7
[Arabidopsis thaliana] gi|17385788|gb|AAL38434; similar
to iron-regulated transporter 1 [Lycopersicon
esculentum] gi|9716481|gb|AAF97509; similar to root iron
transporter protein [Pisum sativum]
gi|3153889|gb|AAC17441; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 365
Score = 30.7 bits (66), Expect = 0.83
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +2
Query: 179 SVEDAGTFKSTNRVVMTLLSFGGGVLLSTTFMHVMPEVQENI-ENLQARNILQEFDFSLT 355
S+ G + + +V TL S GV+L+T FMHV+P+ +++ + Q+F F+
Sbjct: 79 SIPALGPDREMSVIVKTLAS---GVILATGFMHVLPDSFDDLTSKCLPEDPWQKFPFA-- 133
Query: 356 PLLTCCGFFIMYLIEEL-VHIYIHHREKNNGQ 448
+T ++ +IE + Y K G+
Sbjct: 134 TFITMISALLVLMIESFAMCAYARRTSKREGE 165
>At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 492
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/85 (24%), Positives = 33/85 (38%)
Frame = -3
Query: 357 GVSEKSNSWRMFLACKFSMFSWTSGMTCMKVVESSTPPPKESRVITTRFVDLNVPASSTE 178
GV S WR L S+ SW +K VES + + + V A E
Sbjct: 400 GVEVGSRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIGVNKQMYHALVKADIRE 459
Query: 177 SHRNFLAMI*GIRPHIMEAQKSTTM 103
RN ++ ++ +E + TT+
Sbjct: 460 GGRNIDTLLQRMKDDKIEIDEETTV 484
>At4g17600.1 68417.m02632 lil3 protein identical to Lil3 protein
[Arabidopsis thaliana] gi|4741966|gb|AAD28780
Length = 262
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 24 KQTKWLTDTAMTTMTIQMVLYWPKAFPWW 110
K+ KWL + TT + VL+ PWW
Sbjct: 134 KRRKWLEENPETTSNDEPVLFDTSIIPWW 162
>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 963
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 231 CSPSEAVCCSQRLSCTSCLKSKRTLKICKRGTFSKN 338
C PSE V ++ ++ LK R K K+G F KN
Sbjct: 340 CVPSEVVVAPKKRKKSAMLKGGRGRKSAKQGRFKKN 375
>At3g12750.1 68416.m01592 zinc transporter (ZIP1) identical to
putative zinc transporter GB:AAC24197 from [Arabidopsis
thaliana], ( Proc. Natl. Acad. Sci. U.S.A. 95 (12),
7220-7224 (1998)); member of the Zinc (Zn2+)-Iron (Fe2+)
permease (ZIP) family, PMID:11500563
Length = 355
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 212 NRVVMTLLSFGGGVLLSTTFMHVMPEVQENIEN 310
N + + +F GV+L T F+H++P+ E + +
Sbjct: 82 NDIFFMVKAFAAGVILCTGFVHILPDAFERLSS 114
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +1
Query: 109 GALLCLHDMWSNTSDHREKVSMALRRRRGDVQVYEPGGDDSALLRRRC 252
G L C+ +WS+ D R + + R D + PG D + C
Sbjct: 333 GLLTCIDGLWSSCGDERIVIFTTTHKERLDPALLRPGRMDMHIHMGHC 380
>At5g01590.1 68418.m00074 expressed protein
Length = 424
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 306 SMFSWTSGMTCMKVVESSTPPPKESRVITTRFVDLN--VPASSTESHR 169
++F W SG V+ES P S+ TTR N V A ++ +R
Sbjct: 363 ALFLWASGSELTTVLESDHMPTSSSQTTTTRVGQSNTRVKAMGSDKYR 410
>At4g19680.1 68417.m02890 iron-responsive transporter (IRT2) member
of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family,
PMID:11500563
Length = 257
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 224 MTLLSFGGGVLLSTTFMHVMPEVQENIEN 310
M + F G++L T FMHV+P+ E + +
Sbjct: 82 MIVKCFSSGIILGTGFMHVLPDSFEMLSS 110
>At1g66680.1 68414.m07579 S locus-linked protein, putative similar
to S locus-linked protein SLL2 [Brassica napus]
GI:1518113
Length = 358
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 461 VRNLSVRKSRCTEGHSNEAKNSTESGIESPEK 556
V N ++RKS G N+A N SG E+ +
Sbjct: 291 VENFNIRKSNLCRGDGNDANNVLSSGSEAASR 322
>At1g60960.1 68414.m06862 metal transporter, putative (IRT3)
identical to putative metal transporter IRT3
[Arabidopsis thaliana] gi|17385796|gb|AAL38438; similar
to iron-regulated transporter 1 [Lycopersicon
esculentum] gi|9716481|gb|AAF97509; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 425
Score = 28.3 bits (60), Expect = 4.4
Identities = 33/136 (24%), Positives = 58/136 (42%)
Frame = +2
Query: 14 ANRQTNKMAYRHSHDHDDDTDGIVLAKGISMVVLFCASMICGLIPQIIARKFRWLSVEDA 193
A +N + D D L K +++ + A IP +I R R+L +
Sbjct: 38 AATSSNVLCNASESDLCRDDSAAFLLKFVAIASILLAGAAGVTIP-LIGRNRRFLQTD-- 94
Query: 194 GTFKSTNRVVMTLLSFGGGVLLSTTFMHVMPEVQENIENLQARNILQEFDFSLTPLLTCC 373
+ +T +F GV+L+T F+H++ E ++N L +F +S P
Sbjct: 95 ------GNLFVTAKAFAAGVILATGFVHMLAGGTEALKN----PCLPDFPWSKFPF---P 141
Query: 374 GFFIMYLIEELVHIYI 421
GFF M I L+ +++
Sbjct: 142 GFFAM--IAALITLFV 155
>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 654
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 160 EKVSMALRRRRGDVQVYEPGGDDSAL 237
EK+SM L++ + VQ Y P DD+ L
Sbjct: 212 EKMSMVLKKIKDFVQTYNPNLDDAPL 237
>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
similarity to copper homeostasis factor
[GI:3168840][PMID:9701579] and farnesylated proteins
ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
contains PF00403 Heavy-metal-associated domain
Length = 364
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 524 STESGIESPEKNREHEANNPQSRK 595
+T SGI++PEK E + P+S K
Sbjct: 139 ATSSGIDNPEKPGSGECDKPESEK 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,007
Number of Sequences: 28952
Number of extensions: 311447
Number of successful extensions: 1191
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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