Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0515
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   5.4  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   5.4  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    26   7.2  

>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 703 YFLQEHYNMQKNRVDAS 653
           +FL EHYNM + R+ AS
Sbjct: 247 HFLSEHYNMTRTRLIAS 263


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 87  AR*VLYHYTVLSHKLEYTLASHLWRTIKYTHY 182
           AR  LYH+  L+ + E+TLAS  W   ++  +
Sbjct: 104 ARVFLYHF--LNEEKEFTLASFFWGLCRFVFF 133


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 685 NAPARSTHVFITRRSNRIISILEIVIRKSILNII 786
           NAP     +F    S  + +IL  ++ K  LNII
Sbjct: 81  NAPVSRLTIFFAVSSQIVFAILVTILNKQALNII 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,192
Number of Sequences: 5004
Number of extensions: 53934
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)