Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0515
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0397 + 3086142-3086489,3087097-3087252,3088043-3088201,308...    28   7.5  

>03_01_0397 +
           3086142-3086489,3087097-3087252,3088043-3088201,
           3088305-3088388,3089266-3089348,3089486-3089531,
           3089825-3089912,3090009-3090178,3090317-3090430,
           3090497-3090604,3090987-3091202
          Length = 523

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 151 TCGAQLNTRTTDTTSEEVNLRAWLGLF 231
           TC  Q++TRT D   + + LR ++GL+
Sbjct: 183 TCLMQISTRTEDFVVDTLKLRIYIGLY 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,283,282
Number of Sequences: 37544
Number of extensions: 318840
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)