Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0515
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla...    30   2.0  
At5g35870.1 68418.m04308 hypothetical protein similar to unknown...    29   4.7  

>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1424

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 688 HYNMQKNRVDASVISRDDCRYERR*GLISFSAPNALRSIVLNFK 557
           H++  +++ DASV  R  C  E    ++ F++P +L S+ L  K
Sbjct: 520 HFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEK 563


>At5g35870.1 68418.m04308 hypothetical protein similar to unknown
           protein (gb|AAD25831.1)
          Length = 196

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 688 HYNMQKNRVDASVISRDDCRYERR*GLISFSAPNALRSIVLNFKYFVLRKSVHF 527
           H N++  +++  V+S    R++R    +SF AP  L  I L F   +L  +  F
Sbjct: 20  HMNLESIKMNEGVMSFILLRFKRPVSWLSFLAPPLLHIIGLGFSQIILTSAALF 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,933,093
Number of Sequences: 28952
Number of extensions: 264319
Number of successful extensions: 501
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)