Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0513
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    28   1.4  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    27   3.2  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   4.2  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    26   5.6  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   5.6  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   7.4  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   9.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.8  

>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 3   EKFVSHECEASVQFQR*PFKTARNSYIAHTVL*HYLYKLCNFSG 134
           + FV +  +A    QR  FKT  N  +A ++L  Y+Y   N+ G
Sbjct: 265 DSFVQNYGKALQHIQR-AFKTRNNDPVASSILERYVYSKKNYEG 307


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 663 QQLCFIFPHLCTFTDIKQLINHRYYTFKPEETLN-RQNKTNHTTSLLAFP 517
           QQL  IFP +  F ++   + + Y     ++ L  R N  +  TSLL  P
Sbjct: 489 QQLIDIFPTILRFLEMPSFVVYTYAAIALDQLLTVRHNHVHIFTSLLIAP 538


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 671 VTSSSFVSFSHICALSQILNS**TTVITHLNLK-KH*IDKIKQ 546
           VT  SF  FSHI A+    N      I  LN+K KH  D + +
Sbjct: 112 VTMKSFTRFSHIVAIRSTGNCFSWDTIERLNIKPKHWRDLVNE 154


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 258 IYIKESRVSYTIYNSGTAELI 320
           ++ +E R+SYT+Y +G   L+
Sbjct: 197 LFSQEQRISYTVYKNGRLRLV 217


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 666 VQQLCFIFPHLCTFTDIK-QLINHRYYTFKPE 574
           +QQ+C +F H  T  D + Q++   Y+   PE
Sbjct: 161 LQQICVVFKHKQTSQDTRFQILEFFYFYLSPE 192


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 444 CYSISVAFCYTTFYVASHGNVIK--SILCPSPGFTLPPHQFSA 322
           C   S+  C   F+  S  + +   S+ C SP   LPPH  S+
Sbjct: 19  CIPCSLGTCLIHFHEFSSSSFMDPVSLFCSSPYPNLPPHSRSS 61


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 625 ESAQMWENETKLLDVTSRVPPKSPLKK 705
           ES +  ENE   +DVT  VPP   L +
Sbjct: 25  ESEKEGENEVLEIDVTKPVPPSKKLMR 51


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 718  SFTEIFSVDFLEEPEKLRPAALFHFP 641
            SF  IFS  F EEPE  +    F  P
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELP 1861


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,626
Number of Sequences: 5004
Number of extensions: 72241
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)