Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0513
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 29   3.4  
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_59376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   28   7.9  
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 459 LSVAFCYSISVAFCYTTFYVASHGNVIKSILCPS 358
           LS+AFCYS+          V SH NV++ ++C S
Sbjct: 459 LSLAFCYSVDTNNALAD--VLSHNNVLERLVCNS 490


>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 587 HLNLKKH*IDKIKQITQLHSSRSRQKVHFNI 495
           +L  +K  +DK++   QLHS R+    H+NI
Sbjct: 161 YLGSQKKTVDKLEYTLQLHSRRNFHLTHYNI 191


>SB_59376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 394 PRERYKKYPMSFSWF--YATSSPIFSQISSAVP 302
           P E+Y  Y  S  WF  Y T+  I S++ +A+P
Sbjct: 129 PMEKYPGYMQSLIWFHVYYTTRRILSEMGAALP 161


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
 Frame = -1

Query: 678 PRSYVQQLCFIFPHLCTFTDIKQLINHRYYTFKPEETLNRQNKTN------HTTSLLAFP 517
           P S +     ++P +  +T     I HR++ + P  ++  ++         +TT ++  P
Sbjct: 519 PSSSIPHCYHLYPTVIIYTPPSSSIPHRHHLYPPSSSIPHRHHPYPTVIILYTTVIIHTP 578

Query: 516 PKSPLQH-----STIINHT 475
           P S + H      T+I HT
Sbjct: 579 PSSSIPHRHHPYPTVIIHT 597


>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 393  GTRHKTWYNKTQLIWNNKTQLTAKRNIL 476
            GT HKTW     L  + KT LT K  IL
Sbjct: 1105 GTEHKTWETWDVLSADGKTLLTDKEKIL 1132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,871,442
Number of Sequences: 59808
Number of extensions: 482314
Number of successful extensions: 1109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)