Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0512
         (753 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9V3D1 Cluster: CG9008-PA, isoform A; n=9; Endopterygot...    48   2e-04
UniRef50_Q7RJ40 Cluster: Putative uncharacterized protein PY0342...    35   2.5  
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    33   5.7  

>UniRef50_Q9V3D1 Cluster: CG9008-PA, isoform A; n=9;
           Endopterygota|Rep: CG9008-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 297

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +2

Query: 185 MAATSVVVLDRGNNTTCTVNLFGEC*IS 268
           MAATSVVVLDRGNNTTCT+NL G   +S
Sbjct: 8   MAATSVVVLDRGNNTTCTINLHGATVVS 35


>UniRef50_Q7RJ40 Cluster: Putative uncharacterized protein PY03424;
           n=4; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY03424 - Plasmodium yoelii yoelii
          Length = 1856

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 604 LQSNSQGQTRRRQLYSIHSEKKNLLPLN*TPNTRYIRRCAY---YILN 470
           L++N   Q+   Q YSIH+  +NL P+N   N  ++  C Y   Y++N
Sbjct: 739 LKNNGNFQSYYYQNYSIHNLSENLSPINRNQNNDFMNNCDYIKQYVIN 786


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 70  NSNQSQLCAFDAQKDVLVMAPQF 2
           N  ++Q+CAF A+KD  VMAPQF
Sbjct: 742 NPLKTQVCAFTAKKDPFVMAPQF 764


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,166,619
Number of Sequences: 1657284
Number of extensions: 10726436
Number of successful extensions: 19751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19750
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)