Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0512
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    25   0.49 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.0  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 120 NTFKSTVIIVIFCQLASLSNRKWQQRVLSFSTEATIQ 230
           N F ST++++I  +   L  + WQ R  + +   T+Q
Sbjct: 147 NCFHSTLLLMILSRYQRLKAQLWQNRYETVAHGMTVQ 183


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = -2

Query: 266 KSNTHRKDLRYMLYCCLCRERQHSLLPFSV*QRSQLTKYY 147
           ++  +R+++   +Y CL +    S+    V  R+ + +YY
Sbjct: 86  RAEDYRQEVHAQVYVCLAKNSVGSVHSRDVNVRAVVNQYY 125


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +1

Query: 166 LRCQTENGSNECCRSRQRQQYNM 234
           ++C+      +CC++  R  Y+M
Sbjct: 786 IKCKRIYNEKQCCKNCARVDYSM 808


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,910
Number of Sequences: 336
Number of extensions: 3019
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)