Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0512
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0182 + 20997071-20997832,20998010-20998150                       30   2.3  
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508...    29   5.2  
06_03_0570 - 22363197-22363588,22363755-22366782                       28   9.2  

>11_06_0182 + 20997071-20997832,20998010-20998150
          Length = 300

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 580 TRRRQLYSIHSEKKNLLPLN*TPNTRYIRRCAYYILNFNSRT 455
           T+   LYS+  +K  +LPL   PN   I  C  +I+N + R+
Sbjct: 10  TKATGLYSLVEKKAYVLPLQDLPNRHIIVSCYGWIVNADERS 51


>03_02_0025 +
           5084003-5084303,5084449-5084639,5084793-5084873,
           5084972-5085319,5085409-5086293
          Length = 601

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 634 YNLKVSTVYFLQSNSQGQTRRRQLYSI 554
           YN    T+ ++QSN+ G   R Q+Y+I
Sbjct: 126 YNFDQGTILYIQSNACGTRERLQIYAI 152


>06_03_0570 - 22363197-22363588,22363755-22366782
          Length = 1139

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 245 DLRYMLYCCLCRERQHSLLPFSV*QRSQLTKYYYYDCRFEGILSVARSQ 99
           +L  +L   L +   +  +P S+ + +QLT+ Y  D  F G++  A  Q
Sbjct: 538 NLSNLLILSLAQNSFYGKIPLSIGKLNQLTELYLQDNSFSGLIPKALGQ 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,737,747
Number of Sequences: 37544
Number of extensions: 259730
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)