Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0512
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51380.1 68414.m05780 eukaryotic translation initiation facto...    30   1.9  
At3g62760.1 68416.m07050 glutathione S-transferase, putative Glu...    29   2.5  
At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NA...    28   7.7  

>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative
          Length = 392

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
 Frame = +3

Query: 123 TFKSTVIIVIFCQLASLSNRKWQQRVLSFS------TEATIQHVP*IFSVSVRFHYCI 278
           T K+++I +  CQ+ ++S+RK Q  VLS S      TE TIQ +      +++ H CI
Sbjct: 70  TGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIG--AHTNIQAHACI 125


>At3g62760.1 68416.m07050 glutathione S-transferase, putative
           Glutathione transferase III(b) - Zea mays, EMBL:AJ010296
          Length = 219

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 624 KYLQFTSYNPIAKVRLAADNSI-LFTQKKKTCYLSTKHLIHGT 499
           K   F S NP  KV    D+ + LF  +  T Y++ KH   GT
Sbjct: 41  KLPSFLSMNPFGKVPALQDDDLTLFESRAITAYIAEKHRDKGT 83


>At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NADP+
           isocitrate dehydrogenase, putative strong similarity to
           NADP-isocitrate dehydrogenase GI:5764653 from [Citrus
           limon]; Nicotiana tabacum SP|P50218
          Length = 416

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 603 YNPIAKVRLAADNSILFT-QKKKTCYLSTKHLIHGTYEG 490
           YN    +R  A++S+    QKK   YLSTK+ I   Y+G
Sbjct: 184 YNTDESIRAFAESSMYTAYQKKWPLYLSTKNTILKIYDG 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,581
Number of Sequences: 28952
Number of extensions: 236790
Number of successful extensions: 436
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)