Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0511
         (777 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.8  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   6.3  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   6.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -1

Query: 249 SNIVCNFTGEPFLTAVW 199
           +   CNF G P  T  W
Sbjct: 345 ATFTCNFEGNPIKTISW 361


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 195 YTRRPLKMALL*NCKQYCSN 254
           Y   P+ ++++ NC  YC N
Sbjct: 270 YKPLPIVLSIVKNCLSYCFN 289


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 195 YTRRPLKMALL*NCKQYCSN 254
           Y   P+ ++++ NC  YC N
Sbjct: 270 YKPLPIVLSIVKNCLSYCFN 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,546
Number of Sequences: 336
Number of extensions: 3280
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)