Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0511
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    27   2.3  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   4.0  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   5.2  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   6.9  

>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 631 FYYHNFSTRSGISKRKTRSFL*SSIKSVLRNSKYV 527
           F +HN ST++ I++RK      SS+ S + +S YV
Sbjct: 207 FAFHNSSTKTTINRRKKAIGTISSLLSKITSSCYV 241


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 103 EKTFYIYYTNIFTWQDSNPGPSCV 174
           E+T YI   +IFTW+    G SC+
Sbjct: 249 EQTCYIPKKHIFTWKGHTKGISCL 272


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 285 YLYINKFLLSYIITSNANYEQYLYTINIT 371
           +LY+N+ ++  I TSN + E++++ +  T
Sbjct: 78  FLYLNEKIIRLIATSNEDAEEWVHVLRST 106


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 501 IRTKFIILKTYLELRRTLFIELYRNERVFRFEIPDRVLKL 620
           IRT+  +++TY E    L  +LY ++ V+ F  P  ++ +
Sbjct: 377 IRTRQNLVETYPEFTYVLSFQLYIDDSVYVFTRPGVIIAI 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,709
Number of Sequences: 5004
Number of extensions: 51285
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)