Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0511
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0424 + 18949876-18950136,18951467-18951614,18951705-189518...    29   3.1  
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453...    29   5.4  
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808...    28   9.5  

>12_02_0424 +
           18949876-18950136,18951467-18951614,18951705-18951855,
           18952049-18952174,18952258-18952338,18952426-18952618,
           18952693-18952957,18953239-18953480
          Length = 488

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 179 PCHLPLHQTAVKNGSPVKLQTILLKPN 259
           PCH+PL   ++++G P+K  T LL  N
Sbjct: 268 PCHVPLKILSIEDGRPLKSFTHLLHRN 294


>03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,
            4535753-4535809,4535940-4536280,4536979-4537047,
            4537152-4537219,4537404-4539569,4540101-4540178,
            4540326-4540437,4540722-4540772,4540886-4540936
          Length = 1178

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -3

Query: 706  RVQVELNKAAFTQRDL*FSV*CFIRFYYHNFSTRSGISKRKTRSFL*SSIKSVLRNSK 533
            +VQ +LN A    +DL +++   IR  YH   TR  + K K  S L   ++++ R  K
Sbjct: 1113 KVQEDLNVAKERDKDLYYNIMERIRDMYHESGTRHKLMK-KVFSLLHEELQTIKRRIK 1169


>12_02_0893 +
           24077634-24078379,24079347-24080412,24080741-24080866,
           24081278-24081384,24081720-24081744
          Length = 689

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +3

Query: 186 TYHYTRRPLKMALL*NCKQYCSNQMTFHSFIYIYLYINKFLLSYIITSNANYEQYLY 356
           +Y  +   L+ A++ N +    N    ++ +Y+YLY    L+++I+  N     YLY
Sbjct: 579 SYQASLLDLETAVVCNPQLLGGNSSRVNATVYLYLYGEFGLVAWILLVNVTVYLYLY 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,532,969
Number of Sequences: 37544
Number of extensions: 265348
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)