Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0511
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.016
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_53570| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   7.3  
SB_57908| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 243 YCSNQMTFHSFIYIYLYINKFLLSYIITSNANYEQYLYTINIT 371
           Y   Q+TF+ +IYIY+YI  ++  YI T    Y  Y YT   T
Sbjct: 2   YIGIQVTFYIYIYIYIYIYIYIYIYIYTYTYTY-TYTYTYTYT 43


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -3

Query: 136 RYLYNKYKMSFPGLWMYIKYIMYVYNKNFTFISLIWF 26
           +Y Y  Y  S   LW  I Y M+    NF F+    F
Sbjct: 313 KYFYGVYTTSRDCLWRRIVYGMFAQRHNFKFLPFALF 349


>SB_53570| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 2064

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 255 GLSNIVCNFTGEPFLTAVWCSGK*HGQYTRGSRVRI 148
           G   ++CN TG P  T  W     +G   R SR++I
Sbjct: 85  GFVYMICNVTGSPMPTLTWYK---NGSVIRNSRIQI 117


>SB_57908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 130 LYNKYKMSFP---GLWMYIKYIMYVYNKNFTFISLIWF 26
           +YN Y M  P    +W+Y K  +YV+   F ++ L  F
Sbjct: 378 MYNTYAMVNPESKAIWVYSKLYLYVFISLFIYVVLSLF 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,387,700
Number of Sequences: 59808
Number of extensions: 357888
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)