Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0511
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    28   8.6  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    28   8.6  
AC024200-3|AAF36007.1|  305|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 638 KTSNAKL*IALCKSCLIQFNLNTFSSKSSLFAWYMFRKYGDT*SRN 775
           +T+N+ + +    +CL    L   SSK++ F     RK+G T S+N
Sbjct: 76  RTANSCVAVCSLFTCLHSLVLLLHSSKTTAFLGVFVRKFGTTRSKN 121


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 638 KTSNAKL*IALCKSCLIQFNLNTFSSKSSLFAWYMFRKYGDT*SRN 775
           +T+N+ + +    +CL    L   SSK++ F     RK+G T S+N
Sbjct: 76  RTANSCVAVCSLFTCLHSLVLLLHSSKTTAFLGVFVRKFGTTRSKN 121


>AC024200-3|AAF36007.1|  305|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.12 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 454 ATCYFKRLYYYSARY 498
           A CYF   YYYSA+Y
Sbjct: 45  ADCYFIETYYYSAKY 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,750,107
Number of Sequences: 27780
Number of extensions: 278025
Number of successful extensions: 630
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)