Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0510
         (769 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    29   0.031
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    29   0.031
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.50 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.67 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.0  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.0  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.0  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   6.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.2  

>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 29.5 bits (63), Expect = 0.031
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 458 C*NHRDRPHHQRTRLHHHRGRNPLDRQNCDRR 363
           C     R HH +T +  H G  P   ++CDR+
Sbjct: 15  CHKRFTRDHHLKTHMRLHTGERPYRCEHCDRQ 46


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 29.5 bits (63), Expect = 0.031
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 458 C*NHRDRPHHQRTRLHHHRGRNPLDRQNCDRR 363
           C     R HH +T +  H G  P   ++CDR+
Sbjct: 168 CHKRFTRDHHLKTHMRLHTGERPYRCEHCDRQ 199


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 407 HRGRNPLDRQNCDRRNRLDPIGVLNRVLLEGTCH 306
           + GR   D  NC    RL P GV  R     +CH
Sbjct: 285 YTGRATCDCPNCQEAERLGPAGVHLRKKNIHSCH 318


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 578 VGEHTDIQSPVQVPLYKHVTFPVHKPIHINVPKPILVG 691
           V  H    +P + PL+++V  P+   ++ N+P   +VG
Sbjct: 413 VSPHYVTPTPPEAPLFQNVLPPIGGMMNWNMPSTSVVG 450


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -3

Query: 434 HHQRTRLHHHRGRNPLDRQNCD 369
           HH    L +H G  P     CD
Sbjct: 244 HHLEYHLRNHAGSKPFQCNKCD 265


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = -3

Query: 434 HHQRTRLHHHRGRNPLDRQNCD 369
           HH    L +H G  P     CD
Sbjct: 2   HHLEYHLRNHAGSKPFQCNKCD 23


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 695 PQPYPVKIPVNKPVA 739
           P+P P+  PV+KPV+
Sbjct: 38  PKPAPIYSPVSKPVS 52


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 574 SRGRAYRYPKPGPSTPLQARDFPSSQAY 657
           SRGR Y YP P        ++ P+S+ Y
Sbjct: 345 SRGRQYNYPNP-QQQYYYNKNHPNSENY 371


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 574 SRGRAYRYPKPGPSTPLQARDFPSSQAY 657
           SRGR Y YP P        ++ P+S+ Y
Sbjct: 293 SRGRQYNYPNP-QQQYYYNKNHPNSENY 319


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 287 WVRHVQRSEVPDYDHPKLEL 228
           +++H Q+   PDY H ++ L
Sbjct: 332 YLKHEQQGAAPDYRHWQIPL 351


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +2

Query: 143 FAYGGQDFSGGQGHTIALTQEGGGHDFSEAQALGGH 250
           F +G    + G G ++  T   G +  + +  L GH
Sbjct: 608 FDFGEDSINEGDGVSVQCTVSKGDYPLNISWTLNGH 643


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,368
Number of Sequences: 336
Number of extensions: 3896
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)