Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0510
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 29 0.55
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 28 1.3
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 27 2.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.9
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 26 5.2
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 26 6.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 6.8
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.0
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 9.0
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 29.5 bits (63), Expect = 0.55
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 122 GHNGGQNFAYGGQDFSG-GQGHTIALTQEG-GGHDFSEAQALGGHNLGPQIFGHGAPSGG 295
G GG +GG +G G T G GG F A +++ ++FGH GG
Sbjct: 80 GAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQFFSAS--DPNDIFERVFGHAFAGGG 137
Query: 296 DFGG 307
GG
Sbjct: 138 GMGG 141
Score = 25.4 bits (53), Expect = 9.0
Identities = 23/76 (30%), Positives = 25/76 (32%)
Frame = +2
Query: 80 FEGGYSNEVAGDEQGHNGGQNFAYGGQDFSGGQGHTIALTQEGGGHDFSEAQALGGHNLG 259
FE + + AG G GG GG D GGG A GG G
Sbjct: 125 FERVFGHAFAGG--GGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAG 182
Query: 260 PQIFGHGAPSGGDFGG 307
P H S FGG
Sbjct: 183 P----HARRSHPSFGG 194
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 674 KPILVGVPQPYPVK-IPVNKPVAVPVETEISIP 769
KP + P P VK + NKPV++PV TE S P
Sbjct: 385 KPSPLFPPPPPRVKSLATNKPVSMPVSTEQSDP 417
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 126 WPCSSPATSLEYPPSNPALQVATASSKQMNIFMFDL 19
+P SSP S+++ PSNP + + + IF + L
Sbjct: 181 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 216
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 674 KPILVGVPQPYPVKIPVNKPVAVPVETEI 760
KP G P P PV + PVA P +I
Sbjct: 1251 KPRQKGTPSPAPVNSATSTPVAAPTAQQI 1279
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 3.0
Identities = 25/72 (34%), Positives = 27/72 (37%)
Frame = +2
Query: 77 GFEGGYSNEVAGDEQGHNGGQNFAYGGQDFSGGQGHTIALTQEGGGHDFSEAQALGGHNL 256
GF GG+ G+ H G F G F GG G GG LGG
Sbjct: 206 GF-GGFGG-FGGEGHHHGGHGGFGGGPGGFEGGPGGF-------GGGPGGFGGGLGGFGG 256
Query: 257 GPQIFGHGAPSG 292
GP FG G P G
Sbjct: 257 GPGGFG-GGPGG 267
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 596 IQSPVQVPLYKHVTFPVHKPIHINVPKPILVGVPQPYP 709
++SP P V P PI + P PI+ G P P P
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 631 RDFPSSQAYPH*RAQTNFSRSTPTLSS 711
RDF +S+ YPH S + P LSS
Sbjct: 273 RDFKNSEEYPHLFIHLFMSENIPNLSS 299
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 54 WQLPLARLGSKVDTPTKLLEMSRAIT 131
+ +P+A L +D PT +E+ AIT
Sbjct: 96 YAIPMAVLAKSIDLPTYFVELRHAIT 121
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 583 RAYRYPKPGPSTPLQARDFPSSQA-YPH*RAQTNFSRS 693
RA R P P PST + D+ S+ A NF+RS
Sbjct: 19 RALRIPSPIPSTDYECSDYASTIASISRESTMRNFNRS 56
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -2
Query: 180 PWPPEKSWPPYAKF*PP----LWPCSSPATSLEYPPSNPALQVA 61
P P S PP PP L P + PA ++ PPS P+L A
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSA 193
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 153 PYAKF*P--PLWPCSSPATSLEYPPSNPALQVATASS 49
PY P P+ S ++S PPSNP +A ASS
Sbjct: 956 PYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASS 992
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 6.8
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 566 EAIPVGEHTDIQSPVQVPLYKHVTFPVHKPIHI--NVPKPILVGVPQPYPVKIPVNKPVA 739
+++P T+ +P V K+ + P P I VP P+ P P +IP P +
Sbjct: 556 DSLPSNNKTEGYTPSVVREEKNYSEPNASPSVIPPRVPTPVPGRTLSPKPTRIPTPIPSS 615
Query: 740 VPVETEIS 763
+ V E S
Sbjct: 616 LNVSLESS 623
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 38 FICLLLAVATCKAGFEGGYSNEVAGDEQGHNG 133
F LLLA+ AG++G Y + GD NG
Sbjct: 110 FAKLLLALVAKLAGYDGHYLFDNIGDNYKDNG 141
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 98 WSIHLRTQPCKWQLPVANK*ISSCSTCV 15
W H T KW L ++ + SC++C+
Sbjct: 39 WFAHDETPSFKWVLNAYHERLRSCTSCI 66
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 348 WVKAISAVTILAVKGVSPTVVMQARTLVMRAVTVISAAKTGTAV 479
W+KA+ I + + TVV A+ + + ++++ K TAV
Sbjct: 161 WIKAVKVTVIFLAQCIKVTVVFLAQCVKVTSISLAKCVKL-TAV 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,101
Number of Sequences: 5004
Number of extensions: 58330
Number of successful extensions: 218
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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