Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0509
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)                    33   0.27 
SB_40144| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-14)                 30   1.9  
SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)                  30   1.9  
SB_24408| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-17)                 29   5.8  

>SB_28995| Best HMM Match : LicD (HMM E-Value=0.018)
          Length = 1164

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -1

Query: 805 GYYYDYFAAEVSNKIINSTFTLELIMPSTKAYCKTENF 692
           G Y D FA   +N ++N+T T     P+TK Y K E+F
Sbjct: 783 GRYVDIFAYFTTNGVVNTTPTPMYYDPTTKKYFKPEDF 820


>SB_40144| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-14)
          Length = 341

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 25  KKKNIS*LFSSYPFCNFCGFDFYVIIRCYSFVVEVIRGHILGIF 156
           K K++    S+Y   N C  D  V I C   V++++R  +LGIF
Sbjct: 48  KTKSLRRRRSNYLLVNLCIADLLVGIYCLVRVIQLLRNILLGIF 91


>SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 21  IKKKEYLLIV**LPILQFL---WIRFLCDYSMLFIRCGSH 131
           I++   L ++  +PI  FL   W RF+ DY ++F+ C +H
Sbjct: 289 IRRMWILAVLDVVPIFLFLLTSWYRFITDYRIIFVICFAH 328


>SB_24408| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-17)
          Length = 439

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 25  KKKNIS*LFSSYPFCNFCGFDFYVIIRCYSFVVEVIRGHILGIFSF 162
           K K++    S+Y   N C  DF V ++C   V+  +R  +LG F F
Sbjct: 112 KTKSLRRRRSNYLLVNLCIADFLVGLKCLFRVMTYMRELLLGRFHF 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,512,473
Number of Sequences: 59808
Number of extensions: 386143
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)