Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0508
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    32   0.070
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    28   0.86 
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          27   2.0  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    26   4.6  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    26   4.6  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   8.0  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.9 bits (69), Expect = 0.070
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 245  SSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 406
            S GYT+P  + +   Y   +  Y PS     T+PA +P  P Y   +  Y  T P
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 227  SIAVQGSSGYTAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPI-PDYIARAIEYIRT 400
            S A+    G T+P  +P    Y+     Y PS  ++ PT+P+  P  P Y   +  Y  T
Sbjct: 1544 SSAMSPGYGLTSPSYSPSSPGYSTSP-AYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1602

Query: 401  HP 406
             P
Sbjct: 1603 SP 1604


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 20/84 (23%), Positives = 33/84 (39%)
 Frame = +2

Query: 107 QIVSQDADVFPDKYQYQYQTSNGISGQEQGVLVNEGREDASIAVQGSSGYTAPDGTPIQI 286
           Q+ ++ +D+ PD        S G    E  + + +   +    V  SS +    G    +
Sbjct: 96  QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASL 155

Query: 287 TYTADANGYQPSGAHLPTTPAPLP 358
           T+ A   GY P+     T P P P
Sbjct: 156 TFAAARRGYGPALPGSYTIPEPNP 179


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 168 ATESVARNKECS*TRAVRMHPSPSKVQAATLP 263
           ++E  A  KEC     V+ HPSP+ V   TLP
Sbjct: 213 SSEMCASGKECKAADCVKGHPSPATV--TTLP 242


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
 Frame = +2

Query: 170 NGISGQEQGVLVNEGREDASIAVQGSSGYTAPDGT---PIQITYTADANGYQPSGAHLPT 340
           NG +G    V  N   ++ SIA   S      + T   P  +          P  + LPT
Sbjct: 615 NGGNGFPGHVHNNREDDEVSIASTSSKSNVEMEDTRLLPASLELANTQGASNPPTSALPT 674

Query: 341 TPAPLP 358
            P PLP
Sbjct: 675 VPVPLP 680


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 284 SEWEYHQGQCSRLNLG-RRWM 225
           S+WEY  G C+ + +G + WM
Sbjct: 201 SQWEYQVGPCAGIEMGDQLWM 221


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 475 CFNNSRPYQLSYNLNTLADLWLGWV 401
           CF+   P Q   NL + A+LW  W+
Sbjct: 372 CFDGYLPAQERSNLKSKAELWNEWM 396


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 233 AVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLP 337
           A+ G  G TAP G P     +  +N   P G  +P
Sbjct: 547 AMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,399
Number of Sequences: 5004
Number of extensions: 43732
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)