Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0508
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 33 0.22
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 31 0.90
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 30 1.6
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 29 3.6
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 28 6.3
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045) 28 6.3
SB_47780| Best HMM Match : CBM_3 (HMM E-Value=1.8) 27 8.4
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 299
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Frame = +2
Query: 239 QGSSGYTAPDGTPIQITYTAD--ANGY-----QPSGAHL--PTTPAPLPIPDYIARAIEY 391
Q S G+T PIQ +YTA + GY P+ AH P T P+ P Y A Y
Sbjct: 14 QHSQGFTTVQNPPIQTSYTAPQASTGYAVQGTAPTAAHYGPPQTQRPVVQPAYSAGTTAY 73
Query: 392 IRTHP 406
++ P
Sbjct: 74 AQSAP 78
>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 31.5 bits (68), Expect = 0.51
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = +2
Query: 185 QEQGVLVNEGREDASIAVQGSSGYTAPDGTPIQITYTAD-----ANGYQPSGAHLPTTPA 349
+ +G + + S +V GS G +P GTP+ A A ++ S A LP T A
Sbjct: 492 EREGSIHSSSGHSVSGSVTGSIGERSPVGTPVASPVVAPVMSPLAAAHRASSASLPVTTA 551
Query: 350 --PLPIPDYI 373
P P P Y+
Sbjct: 552 VSPAPEPTYL 561
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 30.7 bits (66), Expect = 0.90
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 523 YCETRHINDRQCYGLRCFNNS 461
+C+ +N R CYG+RC+N +
Sbjct: 438 HCDLAMMNGRTCYGVRCYNKT 458
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 227 SIAVQGSSGYTAPDGTPIQITYTADANGYQP-SGAHLPTTPAPLPI-PDYIARAIEYIRT 400
++A S +P TP +YT + Y P S ++ PT+P+ P P Y + + Y
Sbjct: 654 TLAASPSYSPASPSYTPASPSYTPTSPSYSPASPSYSPTSPSYSPASPSYTSASPSYSPA 713
Query: 401 HP 406
P
Sbjct: 714 SP 715
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +2
Query: 242 GSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIP 364
G+ AP GT I+I T + G QP H P PLP P
Sbjct: 92 GAGKPVAPPGTTIRIAVTVNRTG-QPE-IHPEVHPGPLPPP 130
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 254 YTAPDGTPIQITYTA--DANGYQPSGAHLPTTPAPLPIPD 367
Y +P T Y A D GY PS +P++P P P D
Sbjct: 561 YISPTATAGDRRYPARPDPMGYSPSEMGVPSSPLPRPASD 600
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 217 TALVYEHSLFLATDSVAGLILVLVFVRENVSILRHNL 107
T L+ H+L + ++ L L+ R N+ ILRHNL
Sbjct: 345 TLLILRHNLLILRHNLLILRHHLLIFRHNLIILRHNL 381
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 167 WSDIGTGICPGKRQHLATQFGHQ 99
W+ GT CPG++ L Q GH+
Sbjct: 857 WNAFGTHTCPGEQLCLVGQLGHR 879
>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
Length = 514
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +2
Query: 203 VNEGREDASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARA 382
++ G A+ +G+ T P G P Q Y P G H TTP P +Y +
Sbjct: 425 LHPGDTHATTTPRGTHATTTPRGVPTQQLY--------PGGTHATTTPRRYPRNNY-TQG 475
Query: 383 IEYIRTHP 406
+ + HP
Sbjct: 476 VPTQQLHP 483
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +2
Query: 242 GSSGYTAPDGTPIQITYTADANGYQ--PSGAHLPTTPAPLPIPDYIARAIEYIRTHP 406
G+ T P P + YT Q P G H TTP P DY + + HP
Sbjct: 457 GTHATTTPRRYP-RNNYTQGVPTQQLHPGGTHATTTPRRYPRNDYTQEGVPTQQLHP 512
>SB_47780| Best HMM Match : CBM_3 (HMM E-Value=1.8)
Length = 597
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 228 DASSRPSFTSTPCSWPLIPLLV*YW 154
+ S +F+STP WP++ V YW
Sbjct: 477 ELSGEHTFSSTPSQWPIMKRGVAYW 501
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 92 GEADAQIVSQD----ADVFPDKYQYQYQTSNGISGQE 190
G+ +AQ + DV P+ Y Y+T G+ GQE
Sbjct: 1144 GQGEAQYADDEWDYVEDVVPEAETYGYETYQGVEGQE 1180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,091
Number of Sequences: 59808
Number of extensions: 357475
Number of successful extensions: 928
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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