Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0508
         (578 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    33   0.96 
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    33   0.96 
AK074439-1|BAB85084.1|  146|Homo sapiens protein ( Homo sapiens ...    30   6.8  
L20965-1|AAA03588.1|  886|Homo sapiens phosphodiesterase protein.      29   9.0  
AF069491-1|AAC35012.1|  886|Homo sapiens cAMP specific phosphodi...    29   9.0  

>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 32.7 bits (71), Expect = 0.96
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 257  TAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPI-PDYIARAIEYIRTHP 406
            ++P  TP   TYT  +  Y PS  ++ PT+P   P  P Y   + EY  T P
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 32.7 bits (71), Expect = 0.96
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 257  TAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPI-PDYIARAIEYIRTHP 406
            ++P  TP   TYT  +  Y PS  ++ PT+P   P  P Y   + EY  T P
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858


>AK074439-1|BAB85084.1|  146|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23859 fis, clone LNG08092. ).
          Length = 146

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
 Frame = +2

Query: 158 YQTSNGISGQEQGVLVNEG------REDASIAVQGSSGYTAPDGTPIQITYTADANGYQP 319
           YQTS  I  Q Q      G      ++ A         +  PD    Q TYT     YQP
Sbjct: 12  YQTSYSIDEQSQQSYDYGGSGGPYSKQYAGCDYSQQGRFVPPDMMQPQQTYTGQI--YQP 69

Query: 320 SGAHLPTTPAP 352
           + A+ PTTP P
Sbjct: 70  TQAYPPTTPQP 80


>L20965-1|AAA03588.1|  886|Homo sapiens phosphodiesterase protein.
          Length = 886

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 252 PLEPWTAMDASSRPSFTSTPCSWP 181
           P+E   AMD S RP   +T  SWP
Sbjct: 64  PIERADAMDTSDRPGLRTTRMSWP 87


>AF069491-1|AAC35012.1|  886|Homo sapiens cAMP specific
           phosphodiesterase 4A variant pde46 protein.
          Length = 886

 Score = 29.5 bits (63), Expect = 9.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 252 PLEPWTAMDASSRPSFTSTPCSWP 181
           P+E   AMD S RP   +T  SWP
Sbjct: 64  PIERADAMDTSDRPGLRTTRMSWP 87


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,823,279
Number of Sequences: 237096
Number of extensions: 1879594
Number of successful extensions: 8574
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8566
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)