Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0508
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 33 0.19
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 1.4
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 1.4
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 1.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 1.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 1.8
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical pr... 28 5.5
U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical pr... 27 9.6
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 27 9.6
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 27 9.6
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 221 DASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 400
D A + +S + P+ P+ + + Y +++P PLP P ++A +++
Sbjct: 946 DEQPASESTSAFDIPEHPPVIVPFRNAPIVYSSQTSNIPQIHPPLPPPRFLAMPMQF-SG 1004
Query: 401 HPPKPEVGQRI 433
HPP +G I
Sbjct: 1005 HPPPVIMGPPI 1015
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 221 DASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 400
D A + +S + P+ P+ + + Y +++P PLP P ++A +++
Sbjct: 946 DEQPASESTSAFDIPEHPPVIVPFRNAPIVYSSQTSNIPQIHPPLPPPRFLAMPMQF-SG 1004
Query: 401 HPPKPEVGQRI 433
HPP +G I
Sbjct: 1005 HPPPVIMGPPI 1015
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 251 GYTAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPIP-DYIARAIEYIRTHP 406
G+++P +P TY+ + Y PS + PT+P P P + + +Y T P
Sbjct: 1772 GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1825
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 406
T+P +P TY+ + Y+ G + P++P P P Y + Y T P
Sbjct: 1692 TSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSP 1742
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 251 GYTAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPIP-DYIARAIEYIRTHP 406
G+++P +P TY+ + Y PS + PT+P P P + + +Y T P
Sbjct: 1779 GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1832
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 406
T+P +P TY+ + Y+ G + P++P P P Y + Y T P
Sbjct: 1699 TSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSP 1749
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Frame = +2
Query: 89 TGEADAQIVSQDADVFPDKYQYQYQTSNG--ISGQEQGVLVNEGREDASIAVQGSSGYTA 262
TG I D + P + T NG I E+G + G + +A S Y
Sbjct: 5026 TGNVIVPITKPDGTLLPTDSTGSFVTENGDRIEFNEEGKPL--GPDGEVLATDASGNYVY 5083
Query: 263 PDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 361
P G+ ++ T + P G LPT + PI
Sbjct: 5084 P-GSVVEPTAEPQEVTHGPDGQVLPTDASGKPI 5115
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +2
Query: 101 DAQIVSQDAD---VFPDKYQYQYQTSNGISGQEQGVLVNEGREDASIAVQGSSGYTAPDG 271
D QI+S DA V+PD + + G+ ++ G + ++ S PDG
Sbjct: 2984 DGQILSTDASGNYVYPDPGLDSQILTTDVYGKPIYTVI--GPDGTALPTDASGAAIGPDG 3041
Query: 272 TPIQITYTADANGYQPSGAHLPT 340
TPI T + G+ LPT
Sbjct: 3042 TPISTDETGEP--LDKDGSILPT 3062
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Frame = +2
Query: 89 TGEADAQIVSQDADVFPDKYQYQYQTSNG--ISGQEQGVLVNEGREDASIAVQGSSGYTA 262
TG I D + P + T NG I E+G + G + +A S Y
Sbjct: 5071 TGNVIVPITKPDGTLLPTDSTGSFVTENGDRIEFNEEGKPL--GPDGEVLATDASGNYVY 5128
Query: 263 PDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 361
P G+ ++ T + P G LPT + PI
Sbjct: 5129 P-GSVVEPTAEPQEVTHGPDGQVLPTDASGKPI 5160
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +2
Query: 101 DAQIVSQDAD---VFPDKYQYQYQTSNGISGQEQGVLVNEGREDASIAVQGSSGYTAPDG 271
D QI+S DA V+PD + + G+ ++ G + ++ S PDG
Sbjct: 3029 DGQILSTDASGNYVYPDPGLDSQILTTDVYGKPIYTVI--GPDGTALPTDASGAAIGPDG 3086
Query: 272 TPIQITYTADANGYQPSGAHLPT 340
TPI T + G+ LPT
Sbjct: 3087 TPISTDETGEP--LDKDGSILPT 3107
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.5 bits (63), Expect = 1.8
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Frame = +2
Query: 89 TGEADAQIVSQDADVFPDKYQYQYQTSNG--ISGQEQGVLVNEGREDASIAVQGSSGYTA 262
TG I D + P + T NG I E+G + G + +A S Y
Sbjct: 5071 TGNVIVPITKPDGTLLPTDSTGSFVTENGDRIEFNEEGKPL--GPDGEVLATDASGNYVY 5128
Query: 263 PDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 361
P G+ ++ T + P G LPT + PI
Sbjct: 5129 P-GSVVEPTAEPQEVTHGPDGQVLPTDASGKPI 5160
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Frame = +2
Query: 101 DAQIVSQDAD---VFPDKYQYQYQTSNGISGQEQGVLVNEGREDASIAVQGSSGYTAPDG 271
D QI+S DA V+PD + + G+ ++ G + ++ S PDG
Sbjct: 3029 DGQILSTDASGNYVYPDPGLDSQILTTDVYGKPIYTVI--GPDGTALPTDASGAAIGPDG 3086
Query: 272 TPIQITYTADANGYQPSGAHLPT 340
TPI T + G+ LPT
Sbjct: 3087 TPISTDETGEP--LDKDGSILPT 3107
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 314 QPSGAHLPTTPAPLPIPDYIARAIE-YIRTHPPKPEVGQR 430
+PS P+ P P P+P+ I ++ + P KP V +R
Sbjct: 47 EPSSPTRPSEPIPPPLPEPIPELVQILLAAEPNKPSVPKR 86
>Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical
protein W04D2.4 protein.
Length = 624
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 116 SQDADVFPDKYQYQYQTSNGISGQEQGVLVNEGREDASI 232
S + VFP + +YQY+ G+ EQ L + G D ++
Sbjct: 558 SSSSTVFPTRSKYQYRPGKGLERAEQDYL-SRGNGDITL 595
>U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical
protein T19D2.1 protein.
Length = 872
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 532 YFTYCETRHINDRQCYGLRCFNNSRPYQLSYNLNTLADLWLGWVS 398
+ +C + + R CYG RC + L +N + LW GW S
Sbjct: 793 FAAFCRGKDSDVRNCYGQRCSETTTRRPL---VNR-SGLWTGWSS 833
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 109 LGISFTSAHDVRNVSDGYR--DQSEEDVSSHF 20
LGI++ +H VRN++DG QSE D + F
Sbjct: 304 LGINYYLSHIVRNLNDGEEPASQSERDAAYAF 335
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 311 YQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPEVGQ 427
YQP+ +P PAP P Y A + + P P Q
Sbjct: 181 YQPTYCAVPPCPAPAATPVYAQPAPRPMPVYAPAPACAQ 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,450
Number of Sequences: 27780
Number of extensions: 264246
Number of successful extensions: 850
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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