Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0508
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 34 0.060
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 31 0.73
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 31 0.73
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa... 30 0.97
At2g02690.1 68415.m00208 hypothetical protein 29 2.2
At3g25950.1 68416.m03234 hypothetical protein 29 3.0
At4g27800.3 68417.m03994 protein phosphatase 2C PPH1 / PP2C PPH1... 28 5.2
At4g27800.2 68417.m03993 protein phosphatase 2C PPH1 / PP2C PPH1... 28 5.2
At4g27800.1 68417.m03992 protein phosphatase 2C PPH1 / PP2C PPH1... 28 5.2
At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 6.8
At4g00200.1 68417.m00021 DNA-binding family protein contains a A... 27 6.8
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 27 6.8
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 27 6.8
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 27 9.0
At5g23230.1 68418.m02717 isochorismatase hydrolase family protei... 27 9.0
At3g51340.1 68416.m05620 aspartyl protease family protein contai... 27 9.0
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 27 9.0
At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein ... 27 9.0
At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein ... 27 9.0
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 27 9.0
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 34.3 bits (75), Expect = 0.060
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 245 SSGY--TAPDGTPIQITYTADANGYQP-SGAHLPTTPAPLPI-PDYIARAIEYIRTHP 406
S GY T+P +P TY+ + GY P S A+ PT+P+ P P Y + Y T P
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 30.7 bits (66), Expect = 0.73
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 302 ANGYQPSGAHLPTTPAPLPIPDYIA 376
A G+ P GAH P P P P+P +A
Sbjct: 227 AEGFPPLGAHGPFQPTPSPVPTPLA 251
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 30.7 bits (66), Expect = 0.73
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 302 ANGYQPSGAHLPTTPAPLPIPDYIA 376
A G+ P GAH P P P P+P +A
Sbjct: 227 AEGFPPLGAHGPFQPTPSPVPTPLA 251
>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
family protein similar to DNA-binding protein gi|601843
[Arabidopsis thaliana], remorin [Solanum tuberosum]
GI:1881585; contains Pfam profiles PF03763: Remorin
C-terminal region, PF03766: Remorin N-terminal region
Length = 212
Score = 30.3 bits (65), Expect = 0.97
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 272 TPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPE 418
+P ++T A A+ P+ A +P PAP P P + + + + P PE
Sbjct: 13 SPAKVTTPAPADTPAPAPAEIPA-PAPAPTPADVTKDVAEEKIQNPPPE 60
>At2g02690.1 68415.m00208 hypothetical protein
Length = 623
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -2
Query: 226 CILTALVYEHSLFLATDSVAGLILV--LVFVRENVSILRHNLGISFTSAHDVRNVSDGY- 56
C + ALV + L S+ + + V + + I RH+ +SFTS+ + S G
Sbjct: 251 CNVCALVNKLHLTYVCRSICDFVAHSDCIHVPQTIRISRHHHRVSFTSSLPLEKWSCGVC 310
Query: 55 RDQSEEDVSSHFECVC 8
R + + D ++ CVC
Sbjct: 311 RREVDHDYGAYTCCVC 326
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 28.7 bits (61), Expect = 3.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -3
Query: 414 GLGG*VLMYSMARAM*SGIGRGAGVVGRWAPEGW 313
GL G V++Y MA G G GVV RWA W
Sbjct: 187 GLAGPVVLYDMATFY--GSGAADGVVPRWAWLSW 218
>At4g27800.3 68417.m03994 protein phosphatase 2C PPH1 / PP2C PPH1
(PPH1) identical to SP|P49599|P2C3_ARATH Protein
phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) {Arabidopsis
thaliana}; similar to protein phosphatase-2C; PP2C
(GI:3643090) [Mesembryanthemum crystallinum]
Length = 326
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 199 HSLFLATDSVAGLILVLVFVRENVSILRHNLGISFTSAHDVR---NVSDGYRDQSEEDV 32
HS + + D+ GL++ + R S + + S T +R G+RD+ E+D+
Sbjct: 18 HSAYPSADAGGGLVVYPTYGRHRCSAIAIDAPSSLTGVTPIRWGYTSVQGFRDEMEDDI 76
>At4g27800.2 68417.m03993 protein phosphatase 2C PPH1 / PP2C PPH1
(PPH1) identical to SP|P49599|P2C3_ARATH Protein
phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) {Arabidopsis
thaliana}; similar to protein phosphatase-2C; PP2C
(GI:3643090) [Mesembryanthemum crystallinum]
Length = 335
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 199 HSLFLATDSVAGLILVLVFVRENVSILRHNLGISFTSAHDVR---NVSDGYRDQSEEDV 32
HS + + D+ GL++ + R S + + S T +R G+RD+ E+D+
Sbjct: 18 HSAYPSADAGGGLVVYPTYGRHRCSAIAIDAPSSLTGVTPIRWGYTSVQGFRDEMEDDI 76
>At4g27800.1 68417.m03992 protein phosphatase 2C PPH1 / PP2C PPH1
(PPH1) identical to SP|P49599|P2C3_ARATH Protein
phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) {Arabidopsis
thaliana}; similar to protein phosphatase-2C; PP2C
(GI:3643090) [Mesembryanthemum crystallinum]
Length = 388
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 199 HSLFLATDSVAGLILVLVFVRENVSILRHNLGISFTSAHDVR---NVSDGYRDQSEEDV 32
HS + + D+ GL++ + R S + + S T +R G+RD+ E+D+
Sbjct: 18 HSAYPSADAGGGLVVYPTYGRHRCSAIAIDAPSSLTGVTPIRWGYTSVQGFRDEMEDDI 76
>At4g33910.1 68417.m04812 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Drosophila melanogaster
[GI:4336512]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 288
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -2
Query: 136 ENVSILRHNLGISFTSAHDVRNVSDGYRDQSEEDVSS 26
E+ +ILR+ LG + S +DV N ++ Y QS + ++S
Sbjct: 166 ESFNILRYELGQKYDSHYDVFNPTE-YGPQSSQRIAS 201
>At4g00200.1 68417.m00021 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 345
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +2
Query: 161 QTSN-GISGQEQGVLVNEGREDASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLP 337
+T N G G+ G+ V+ D + G +G TPIQ+T+ ++ N Y G+ +
Sbjct: 209 ETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIA-ATPIQVTHESNNNVYVVVGSFIT 267
Query: 338 TTPA--PLPIPDYIARAIEYIRTHPPKP 415
+ P + A + + PP P
Sbjct: 268 SDQQDHQKPRKQRVEHAPAAVMSVPPPP 295
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 302 ANGYQPSGAHLPTTPAPLPIPDYIA 376
A G+ P GAH P P P+P +A
Sbjct: 227 AGGFPPLGAHGPFQPTASPVPTPLA 251
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 302 ANGYQPSGAHLPTTPAPLPIPDYIA 376
A G+ P GAH P P P+P +A
Sbjct: 227 AGGFPPLGAHGPFQPTASPVPTPLA 251
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +2
Query: 236 VQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 415
V SS P P T +NG + P PAP +P + A T PP P
Sbjct: 722 VHTSSPPPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP--PTAPPPP 779
Query: 416 EVGQ 427
+GQ
Sbjct: 780 PLGQ 783
>At5g23230.1 68418.m02717 isochorismatase hydrolase family protein
low similarity to SP|P45743 Isochorismatase (EC 3.3.2.1)
(2,3 dihydro-2,3 dihydroxybenzoate synthase)
(Superoxide-inducible protein 1) (SOI1) {Bacillus
subtilis}; contains Pfam profile PF00857:
isochorismatase family protein
Length = 198
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 131 VFPDKYQYQYQTSNGISGQE-QGVLVNEGREDASIAVQGSSGYTAPDGTPIQITYTADAN 307
VF ++ ++ T +G+ G+ G L+ +G D+ I + + T PD + TY+A N
Sbjct: 57 VFFTRHNHKSPTDHGMLGEWWNGDLILDGTTDSEIIPEINRQVTGPDEIVEKSTYSAFNN 116
>At3g51340.1 68416.m05620 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 518
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 242 GSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 361
G GYT + TP+ T+ A G +G + P +P+
Sbjct: 273 GDKGYTDQEETPLVSLETSTAYGVNVTGVSVGGVPVDVPL 312
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 149 QYQYQTSNGISGQEQGVLVNEGREDASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGA 328
Q + +N ++G EQ V +G +DA +S T G P + ++ NG A
Sbjct: 159 QVRSPVNNILTGTEQTVHNTDGSKDAETQEWSNSSVTKESGKPPKPHTNSNGNGSLLPFA 218
Query: 329 HLP 337
+P
Sbjct: 219 QMP 221
>At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein
(FLA7) identical to gi_13377782_gb_AAK20860
Length = 254
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 284 ITYTADANGYQPSGAHLPTTPAPLPIPDYI 373
I +A A P LP TPAP P P+ +
Sbjct: 16 IVCSASAKTASPPAPVLPPTPAPAPAPENV 45
>At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein
(FLA7) identical to gi_13377782_gb_AAK20860
Length = 254
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 284 ITYTADANGYQPSGAHLPTTPAPLPIPDYI 373
I +A A P LP TPAP P P+ +
Sbjct: 16 IVCSASAKTASPPAPVLPPTPAPAPAPENV 45
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 138 RTNTSTNIRPATESVARNKECS*TRAVRMHPSPSKVQAATL 260
R N++ +RP S A + EC T + SP++V L
Sbjct: 692 RRNSAARVRPVLLSQATSHECPVTSVRPLRTSPARVMPTKL 732
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,512,222
Number of Sequences: 28952
Number of extensions: 243467
Number of successful extensions: 899
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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