Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0507
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    27   5.1  
U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine rece...    26   9.0  
U21310-5|AAY86191.1|  148|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
           protein C13B4.1a protein.
          Length = 1010

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 67  STVYSLGLFLIMFNNVILVCRKSKKK 144
           S +++L LF I+FNNV+ V  KS  K
Sbjct: 905 SVIFALSLFFIIFNNVVDVDTKSFTK 930


>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 7   ILSKVPILLSTTRHSLASYHSTVYSLGLFLIMFNNVILV 123
           IL K P  +S+ + SL +  +T + L LFL +F  + L+
Sbjct: 44  ILFKTPKEMSSVKWSLFNLQTTSFLLDLFLSVFGTIQLL 82


>U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein201 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 22  PILLSTTRHSLASYHSTVYSLGLFLIMF 105
           P   ST+ H ++   + ++SLGLF I+F
Sbjct: 22  PQFYSTSMHIVSVIATPIHSLGLFCILF 49


>U21310-5|AAY86191.1|  148|Caenorhabditis elegans Hypothetical
           protein F40H6.6 protein.
          Length = 148

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 399 FFFLFYSKIYYGVKLYLSY 343
           FFF FY  I+Y +K+Y++Y
Sbjct: 117 FFFKFYF-IFYKIKIYMNY 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,235,779
Number of Sequences: 27780
Number of extensions: 121250
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)