Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0507
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05220.1 68414.m00527 expressed protein ; expression supporte...    27   3.6  
At3g06440.1 68416.m00745 galactosyltransferase family protein co...    27   6.3  
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ...    26   8.3  

>At1g05220.1 68414.m00527 expressed protein ; expression supported
           by MPSS
          Length = 160

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 388 VLFENLLWSQIIFIVPLITIF*YTIL 311
           + F  L+W +IIF++PL  +  Y IL
Sbjct: 61  LFFVGLVWHEIIFLLPLSIVNIYAIL 86


>At3g06440.1 68416.m00745 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 619

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 333 QYFNIQY*FFKCINDY*YHNFDCKSYF 253
           Q FN      K IND  +HN DCKS +
Sbjct: 565 QQFNQTIKRVKYINDKRFHNSDCKSNY 591


>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
           carotenoid isomerase from Lycopersicon esculentum
           [gi:19550437]; contains Pfam profile: PF02032 Phytoene
           dehydrogenase related enzyme
          Length = 595

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 67  STVYSLGLFLIMFNNVILVCRKSKKK 144
           ST Y LG   + FN  +L  RK KKK
Sbjct: 22  STYYKLGTSNLGFNGPVLENRKKKKK 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,393,732
Number of Sequences: 28952
Number of extensions: 96512
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)