Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0506
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  31   0.74 
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   29   3.0  
SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3)                    29   5.2  
SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)                    28   6.9  

>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 701 RLLPVWCYVAVAAY---GHTQLYGNYAYCSFCVFLRFITRCYSIFLIYS 564
           RL  ++ Y ++  +    H +L+  YAYCS  VF+  +  C  +F+IY+
Sbjct: 218 RLFMIYAYCSLFVFITIVHARLFMIYAYCSLFVFITIVHAC--LFMIYA 264



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -1

Query: 701 RLLPVWCYVAVAAY---GHTQLYGNYAYCSFCVFLRFI-TRCYSIFLIYSIF 558
           RL  ++ Y ++  +    H +L+  YAYCS  VF+  +  R + I+   S+F
Sbjct: 198 RLFMIYAYCSLFVFITIVHARLFMIYAYCSLFVFITIVHARLFMIYAYCSLF 249



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 656 HTQLYGNYAYCSFCVFLRFI-TRCYSIFLIYSIF 558
           H +L+  YAYCS  VF+  +  R + I+   S+F
Sbjct: 196 HARLFMIYAYCSLFVFITIVHARLFMIYAYCSLF 229



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 656 HTQLYGNYAYCSFCVFLRFITRCYSIFLIYS 564
           H + +  YAYCS  VF+  +  C  +F+IY+
Sbjct: 96  HARPFMIYAYCSLFVFITIVHAC--LFMIYA 124


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 656 HTQLYGNYAYCSFCVFLRFITRCYSIFLIYS 564
           H +L+  YAYCS  VF+  +  C  +F+IY+
Sbjct: 235 HARLFMIYAYCSLFVFITIVHAC--LFMIYA 263



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 656 HTQLYGNYAYCSFCVFLRFITRCYSIFLIYS 564
           H +L+  YAYCS  V +  +  C  +F+IY+
Sbjct: 95  HARLFMIYAYCSLFVLITIVHAC--LFMIYA 123



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 713 HG*MRLLPVWCYVAVA-AYGHTQLYGNYAYCSFCVFLRFITRCYSIFLIYSIFTM 552
           H  + ++  +C + V     H  L+  YAYCS  V +  I  C  +F+IY+  ++
Sbjct: 175 HARLFMIHAYCSLFVLITIVHAGLFMIYAYCSLFVLITIIHAC--LFMIYAFCSL 227



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 656 HTQLYGNYAYCSFCVFLRFITRCYSIFLIYSIFTM 552
           H  L+  YAYCS  V +  +  C  +F+IY+  ++
Sbjct: 135 HACLFMIYAYCSLFVLITIVHAC--LFMIYAFCSL 167


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 656 HTQLYGNYAYCSFCVFLRFITRCYSIFLIY-SIFTM 552
           H +L+  YAYCS  VF+  +  C  +   Y S+F +
Sbjct: 195 HARLFMIYAYCSLFVFITIVHACLFMINAYCSLFVL 230



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 656 HTQLYGNYAYCSFCVFLRFITRCYSIFLIYS 564
           H +L+  YAYCS  V +  +  C  +F+IY+
Sbjct: 95  HARLFMIYAYCSLFVLITIVHAC--LFMIYA 123


>SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3)
          Length = 218

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 605 SKTRKNYN-MRNYHTIGCVHRLRQPHNTRRA 694
           S+T K Y  + NY+T  CV++L  PH  R +
Sbjct: 140 SETTKFYTGLPNYNTFNCVYKLIHPHIKRNS 170


>SB_50854| Best HMM Match : ig (HMM E-Value=6.1e-27)
          Length = 770

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +2

Query: 17  ATSLYVLLTPLMTYSGNSLRSSKRNFPFA*LLNIREACSVTSCV-RYTLHYL---EKYVA 184
           + S  + LT     +   L     NF FA +L +   CS++SC+  + + YL   ++++ 
Sbjct: 541 SNSSMIYLTVANVSAVGLLPKDSSNFSFAGVLGVIALCSISSCIAAFAVRYLIRRKRFIH 600

Query: 185 LSIQ*ISVALNKK 223
           L     S  LN K
Sbjct: 601 LKGSISSKHLNNK 613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,712,768
Number of Sequences: 59808
Number of extensions: 409272
Number of successful extensions: 848
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)