Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0506
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    29   4.5  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    29   4.5  
Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 573 EKDRITSCNKPQKHAKTTICVITIQLGVSIGCDSHITPDGQ 695
           EK+R  S N P+K A T    IT+Q  +++   S ITP+ Q
Sbjct: 553 EKNRSESHNLPEKSASTQRPTITLQESLNL---SKITPESQ 590


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 573 EKDRITSCNKPQKHAKTTICVITIQLGVSIGCDSHITPDGQ 695
           EK+R  S N P+K A T    IT+Q  +++   S ITP+ Q
Sbjct: 553 EKNRSESHNLPEKSASTQRPTITLQESLNL---SKITPESQ 590


>Z74032-2|CAA98466.2|  248|Caenorhabditis elegans Hypothetical
           protein F35B12.3 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 698 LLPVWCYVAVAAYGHTQLYGNY 633
           LL V C +  AAY ++Q YGNY
Sbjct: 6   LLVVSCGILAAAYPYSQQYGNY 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,473,305
Number of Sequences: 27780
Number of extensions: 331339
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)