Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0506
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   6.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 654 VSIGCDSHITPDGQQ 698
           VS G DS+  PDGQQ
Sbjct: 70  VSQGSDSYTAPDGQQ 84


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = -1

Query: 698 LLPVWCYVAVAAYGHTQLYGNYAYCSFCVFLRFITRCYSIFLIYSI 561
           L+ ++C      Y   QL  +YA   FC+       C +I   + +
Sbjct: 428 LIGLFCITEGGMYVF-QLLDSYAVSGFCLLFLMFFECIAISWAFGV 472


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = -1

Query: 698 LLPVWCYVAVAAYGHTQLYGNYAYCSFCVFLRFITRCYSIFLIYSI 561
           L+ ++C      Y   QL  +YA   FC+       C +I   + +
Sbjct: 481 LIGLFCITEGGMYVF-QLLDSYAVSGFCLLFLMFFECIAISWAFGV 525


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/30 (26%), Positives = 13/30 (43%)
 Frame = +2

Query: 623 YNMRNYHTIGCVHRLRQPHNTRRAATSFIH 712
           Y ++N+H    V+    P N R      +H
Sbjct: 147 YTVKNFHPRCAVNNYNDPSNVRNCELVGLH 176


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 697 CCPSGVMWLSQPMDTPNCMVITHIVVF 617
           CC   +   S+ + TP+ M I  + +F
Sbjct: 76  CCVIWIFSTSKSLRTPSNMFIVSLAIF 102


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 697 CCPSGVMWLSQPMDTPNCMVITHIVVF 617
           CC   +   S+ + TP+ M I  + +F
Sbjct: 76  CCVIWIFSTSKSLRTPSNMFIVSLAIF 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,093
Number of Sequences: 438
Number of extensions: 3988
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)