Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0505
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   1.1  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    24   1.4  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   4.3  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   4.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   7.5  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.9  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 457 EGRAR-NATDALTPSSGRYMDTYCDNADM 540
           EGR   N TD+LT  +   +D  C  +DM
Sbjct: 523 EGRQEPNMTDSLTRLANSALDNICQASDM 551


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +1

Query: 619 IKFKHLMYMCVRTLDLKQKN 678
           ++FK ++++C+ TL L QK+
Sbjct: 1   MQFKPILFLCLATLALGQKD 20


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 619 IKFKHLMYMCVRTLDLKQKN 678
           ++FK ++ +C+ TL L QK+
Sbjct: 1   MQFKPILVLCLATLALGQKD 20


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 149 DFRTGVFSASVLKFYFLFCAITLFTIKVRSKRYS 250
           DF++ + S SV  F+F+   + +F +    K  S
Sbjct: 206 DFKSVIRSISVFSFFFMPSFVDIFRLTFVDKTAS 239


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 250 AVSFTPNLNCKQSDCTKQKIKLQNTGRKYAGAKI 149
           A +FT     K+  CT   + L +   K +GA +
Sbjct: 5   ARTFTIKCPVKKRKCTVSNVSLHSLKNKRSGASL 38



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 179 VLKFYFLFCAITLFTI 226
           +L  Y+ +CA  +FT+
Sbjct: 143 LLCIYYFYCAFIIFTV 158


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +1

Query: 124 HVSCQISARFSHRRIFGQCF 183
           H+ C + +  S    +G CF
Sbjct: 92  HIHCSVKSESSQAAKYGGCF 111


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 231 TLIVNKVIAQNKK*NFKTLAENTPVRKSRGNLTANVL 121
           TLI+  V   + +  +  +A+N+    +RG+L   V+
Sbjct: 564 TLIIENVERASDQATYDCVAKNSQGYSARGSLEVQVM 600


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 256 PKLQDNVHSCHHEGRK*QHPVPRHH 330
           P L     + HH G   Q   P+HH
Sbjct: 155 PPLTTQSMNNHHMGHHMQEQHPQHH 179


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 256 PKLQDNVHSCHHEGRK*QHPVPRHH 330
           P L     + HH G   Q   P+HH
Sbjct: 157 PPLTTQSMNNHHMGHHMQEQHPQHH 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,498
Number of Sequences: 336
Number of extensions: 3995
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)