Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0505
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    29   0.50 
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       26   6.1  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    25   8.1  
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    25   8.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   8.1  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 533 ALSQYVSMYLPLDGVNASVAFRARPS 456
           A  QYVS +L +DG+  S+ F  RPS
Sbjct: 354 ATKQYVSCFLKVDGIMRSLYFLPRPS 379


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 433 RSDAAEQRFRRHLLIISIGGDT 368
           R   A Q FR H ++I +GG+T
Sbjct: 140 RYQTALQEFREHEMLIDVGGNT 161


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 163 RIFGQCFEVLFFVLCNHFVYN 225
           ++FG+   V FF+LC H V N
Sbjct: 32  KVFGRSSIVTFFLLCFHLVPN 52


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 350 RGYTPPSVTSNGNYKQVSSKALFGSVASINDLKRQE 457
           RGY       +GNY    + ++ G+  S+  L RQE
Sbjct: 143 RGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQE 178


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 454  GEGRARNATDALTPSSGRYMDTYCDNADMNLKK*WKLRNDL 576
            G+G+A N   AL    G Y+     N D  +++  K+RN L
Sbjct: 1054 GDGKADNQNMALPFVRGEYLQLIDANQDNYIEECMKIRNVL 1094


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,438
Number of Sequences: 5004
Number of extensions: 62584
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)